Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1569 ATGATCCTCCCCTGCGACTTCTGCGACTCCAAAACCGCCGTTCTCTTCTGCAAAGCCGATTCAGCCAAACTCTGTCTGTTATGCGACCAGCACGTCCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTACCAGATTTGCGACACCTGCAAGAGCGACACCGCTTCCGTTCGCTGCTCCACCCACAACCTCGTACTCTGTCACCACTGCGACTCCCACGCCCACTCCACCGCCTCTCCCCACCACCGCCACCGCCTCCATGGCCTCTCCGGATGCCCCTCCGTTCCCGAGATTGCCTCCGCTCTCGGCCTCGATTTCAGTCCCGACCACCCGCCCCAAGACCCCGACTGCCCCGTCGTCCCCACCGCCGCCGCCCCCCCCAAGTATAATAGAGATGACGTCTACCAACAGGTGCTCGAGATTGCCAGAAGGAGGGACTTCAGTGCTCAGAGCGTTCAGCTCAAGTTCAACCATCATGATACTAATAACAACCACCAAAACGACGTCGTTGATGAGATGCTTCTCCAGCAGACGCCTTTTACGTCCTTGCTCATGTTGCCGTCTGAATCTGAATTTGACGCCAGGAAAAGTAATGATAACGGTTACGGAGCCGAAACAGGGGATCTTCTCTGGAATTGTTGTCCCACGTATCATACCCCTCAGGTGTGGGATTTTCAATTACAGAAATCGAGAGATTGTGGTGAACCAAGGGTATTGACATTTGATGGTCTAGAAGAAACATCCCTCTCCATTCCAAGAGCGTTTCAAGATGTGCACAATATGAATTGCTCAACTATTGGTGATGATATTCTTTCCCGAAATAATCAATCGGATCAGTCATCATCAAGTCATGCGAAGAAGAAAGAAGAAAGCAACAACAAAGCAAGAGATGGGTTTTCATCCGAGTCCAATTTAATTGAATCCATAACGTATAGTGGCACCAACAATGTCACGAACATGGAGCATCTTGTGGGTGGGAGTGAAAATGTTAGCTCCTTAAAAGCCAAGATTAGCTTGGAAGAATTGGCTAAGAATAGAGGGAATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAGGTATGATAAACACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGGGGGAGATTTGTTAAGGCAACTGATATAACTGATGTTCAAGCATGA 1194 0.4983 MILPCDFCDSKTAVLFCKADSAKLCLLCDQHVHAANALSLKHVRYQICDTCKSDTASVRCSTHNLVLCHHCDSHAHSTASPHHRHRLHGLSGCPSVPEIASALGLDFSPDHPPQDPDCPVVPTAAAPPKYNRDDVYQQVLEIARRRDFSAQSVQLKFNHHDTNNNHQNDVVDEMLLQQTPFTSLLMLPSESEFDARKSNDNGYGAETGDLLWNCCPTYHTPQVWDFQLQKSRDCGEPRVLTFDGLEETSLSIPRAFQDVHNMNCSTIGDDILSRNNQSDQSSSSHAKKKEESNNKARDGFSSESNLIESITYSGTNNVTNMEHLVGGSENVSSLKAKISLEELAKNRGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKATDITDVQA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1569 397 CDD Bbox1_BBX-like 4 47 - -
Apr4g1569 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 3 393 - -
Apr4g1569 397 MobiDBLite consensus disorder prediction 268 282 - -
Apr4g1569 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 393 - -
Apr4g1569 397 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr4g1569 397 MobiDBLite consensus disorder prediction 283 297 - -
Apr4g1569 397 Pfam CCT motif 347 389 IPR010402 GO:0005515
Apr4g1569 397 MobiDBLite consensus disorder prediction 268 301 - -
Apr4g1569 397 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Apr4g1569 397 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Apr4g1569 397 SMART bboxneu5 3 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1569 Apr-Chr4 17230534 17233951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1569 2 391 C2C2-CO-like Transcription Factor Family AT2G33500 36.967 7.63e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr4g1569 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1569 - - aprc:113862926 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1569 4 17230534 17233951 Apr4g1569 4 17230534 17233951 ECH