Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1562 ATGATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCAGAAAACCGAGGCCTGTGGTTTGGTGGCAGGTGTTGGGGCCGAGCTTGGACTTGTCACCGTTTCAGGAGACAAGAAGAAGATCATTCATGGGTCGGGTCCGATCCACCATGATCTTGTTGCTGCTGTTACCACCTTCGCAAATGTTCAAAGGAAGAAAAGAATGCCACGCCAAAGAAGATCCACCACCACCATCAACAACAACCACAACTCCTCTAAGCACAGGCTTCGTTTTCCACCTCTTGCTCCTTCTGTTTCCTCTCACGTGCCACTCTCCTCGCTCCCTTCTAGTAAACCCTCCACTACTCCCCCAGCCGAAATTGATCATAAAAGGTTGAGATTTCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTCAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCTGCCCTTGAATCAAAAGAAGGAATTCTGATCAACATGGATGATCTAGATGGTCATCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAATAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTGTTAAAGCACATGGCCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAGTCAAAACCATAATTATGTTATTCAGGCCAAAAAGGCTTCAGATCAGGATGAATTTATGGAGGAAACTAGTGATGCCATCAACGATATCTTCCTTAATGATTATGAGGTGAACAAACCTGGTTGCTTCAATGTAACCTACCCAGCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACTTTTTCAAATGATTCCCCACTTGATTTTTTGGGTGGATCAATGACCAATTATTCAAGGATTGGACCAGTTGAAACCTTTGGTTCCGTTGAGAATTTGTCACTTGATGACTTCTATTAA 951 0.4301 MMMDQRQREKLLQKTEACGLVAGVGAELGLVTVSGDKKKIIHGSGPIHHDLVAAVTTFANVQRKKRMPRQRRSTTTINNNHNSSKHRLRFPPLAPSVSSHVPLSSLPSSKPSTTPPAEIDHKRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGILINMDDLDGHHVWSFKYRFWPNNNSRMYVLENTGDFVKAHGLRFGDSIMVYQDSQNHNYVIQAKKASDQDEFMEETSDAINDIFLNDYEVNKPGCFNVTYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNYSRIGPVETFGSVENLSLDDFY* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1562 316 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Apr4g1562 316 Gene3D - 124 242 IPR015300 -
Apr4g1562 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 59 316 - -
Apr4g1562 316 Pfam B3 DNA binding domain 128 225 IPR003340 GO:0003677
Apr4g1562 316 SMART B3_2 128 230 IPR003340 GO:0003677
Apr4g1562 316 MobiDBLite consensus disorder prediction 61 92 - -
Apr4g1562 316 SUPERFAMILY DNA-binding pseudobarrel domain 126 225 IPR015300 -
Apr4g1562 316 CDD B3_DNA 126 228 IPR003340 GO:0003677
Apr4g1562 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 316 IPR044800 GO:0003700
Apr4g1562 316 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1562 Apr-Chr4 17083947 17086953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1562 1 316 B3 DNA Binding Superfamily AT3G26790 49.714 1.11e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr4g1562 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1562 - - gmx:100783961 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1562 4 17083947 17086953 Apr4g1562 4 17083947 17086953 ECH