Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1559 ATGGCGAGCAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCTGCATCCACTCTATGGAACCAATTGCAGCAACAAATCTCCAACCATTCCTTCGACACTCCTCTCTACAGATTCAACATCCCCAACCTCCGCGTTGGAACCCTAGACTCTCTCCTCTCTCTCAGCGACGACCTCGCCAAGTCCAACAACTTCGTCGAAGGAGTGACTCACAAAATCCGGCGTCAGATTGAGGAACTTGAGAGAGTTTCAGGCGTGGAGAGCGGCGGTCTCACCGTGGATGGAGTGCCTGTTGATTCCTACTTGACCAGGTTTGTTTGGGATGAAGCTAAGTACCCGACAATGTCGCCTTTGAAGGAGATCGTGGATGGTATTCATAGTCAAGTCGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATGTCCGTGGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTTCGTGATCTTTCCAATTTGGTAAAACCTGAGGACATTATAATTTCAGAACATTTAACTACCCTCCTTGCCATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTACGAAACATTGACAAGCTATGTGGTCCCCAGGTCATCTAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCGGATAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAATCCCGAAACACACGAGAGCCGAAAGCAGGAATTAGATAAATTGATGCAAGATCAGGAAAGTTTGAGGGCTTCTCTGTTGCAATGGTGCTACACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTGTTTGCTGAGAGCATTCTGCGATATGGTTTGCCCCCGTCTTTCTTGGCATGTGTTTTAGCTCCTTCTGTAAAATCTGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCATAAACAGTGGATACTGGAAGATGGAGGATGAAGTAGGTGCTGGGCTAGCTGGCCTAGCAGGCGATGCTGACGCCCACCCTTACGTTTCTTTCACTGTCAATCTTGCTTGA 1131 0.4598 MASRYWAVSLPVHNSASTLWNQLQQQISNHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGVESGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNVRGQLNAINRKQTGSLAVRDLSNLVKPEDIIISEHLTTLLAIVSKYSQKDWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYNPETHESRKQELDKLMQDQESLRASLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSINSGYWKMEDEVGAGLAGLAGDADAHPYVSFTVNLA* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1559 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Apr4g1559 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Apr4g1559 376 Gene3D Vacuolar atp synthase subunit c; domain 1 8 334 - -
Apr4g1559 376 Gene3D - 163 251 - -
Apr4g1559 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Apr4g1559 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Apr4g1559 376 Gene3D - 41 312 - -
Apr4g1559 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1559 Apr-Chr4 17023529 17028332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1559 1 376 Primary Pumps ATPases(2) AT1G12840 82.713 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1559 K02148 - gmx:100813963 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1559 4 17023529 17028332 Apr4g1559 4 17023529 17028332 ECH
Apr4g1559 4 17023529 17028332 Apr6g1375 6 20807162 20814731 ECH