Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1554 ATGGAGAGATACACGCTACCCTTACCCCTTCCTTCACTTCCATGGATGGAACCTCAACTTGAAGAAGAAGAGGAAGAAGAAGAAGCAGCGTCGTGGACCGCACCCTACTCCGAACCTAATCACGACCAACACCACATTGCCATTTCCATGCCTGCCCCTCTCACTTCCTTTAAATCCATGCTTCAACAGCCCCAACCTCCACCCGAACCTCAACCTCACTGCTACTTCAACTCTTCCATTAGCAACCCCTTTGTTCCTAACCCAACAACAACAACCACACCAACCGATAACTTCCTCATGCACCCTCACAGCATCAACATCGACTCTTTCCCTCTCGACCCCTCTCCCTCCCTCCCTTTCTTCAACACCAACACTTTTGACTCCGGCTTCGATTTGGGCCTCGAAGCTGGCTTTTTACCCGGGAACCACTCCTCCAATTCCCCTCTCTTCATGGGCTTTTCTCCGGCCCATACGGGCTCCGAGTTCGGAGAACTCGGAGCCCTCATTCCGAGCAGAGCCAAGGCTCTCAAGCCCTTGGAGGCGCCGCAACCGACGCTGTTCCAGAAGCGGCGAGGTTCGGTGGAGATTCCGGGCTTGGAGACTGTGAGGAGGAAGGGGAGGGAATGGGAAGAAGGGGAAGGCGAAGAAGGTAATAGCATTGACGTTGATGCTTATGATTCTGATGACCAAATTGAGAATGGGAATGGTTTGAATCCGAGTGACACTGTCACTGTTACTGGTGGAGATCACAAGGGGAAGAAGAAGGGCCTACCCGCCAAAAATCTCATGGCTGAGAGGCGCCGTAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCCTCGATACTTGGGGATGCAATTGACTACTTGAAGGAGCTATTGCAGCGGATTAATGATCTTCATAATGAGCTAGAGTCGACTCCACCTGGCTCATTGCTGCCAGCTTCTTCAAGCTTTCACCCTTTGACACCCACTCCACCAACCCTTCCTTGCCGGGTCAAGGAGGAACTATATCCTGGCTCCCTGCCAAGTCCTAAAAACCAAGCTGCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTCTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTCATTAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCTGTGCTCTTGGATTCAGCAGGATTCCATGCTTGCAGTTTGTAA 1347 0.5085 MERYTLPLPLPSLPWMEPQLEEEEEEEEAASWTAPYSEPNHDQHHIAISMPAPLTSFKSMLQQPQPPPEPQPHCYFNSSISNPFVPNPTTTTTPTDNFLMHPHSINIDSFPLDPSPSLPFFNTNTFDSGFDLGLEAGFLPGNHSSNSPLFMGFSPAHTGSEFGELGALIPSRAKALKPLEAPQPTLFQKRRGSVEIPGLETVRRKGREWEEGEGEEGNSIDVDAYDSDDQIENGNGLNPSDTVTVTGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLPASSSFHPLTPTPPTLPCRVKEELYPGSLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGFHACSL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1554 448 CDD bHLH_AtAMS_like 259 330 - -
Apr4g1554 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 323 IPR036638 GO:0046983
Apr4g1554 448 Coils Coil 299 319 - -
Apr4g1554 448 PANTHER BHLH TRANSCRIPTIONAL FACTOR 63 446 - -
Apr4g1554 448 CDD ACT_UUR-ACR-like 376 436 - -
Apr4g1554 448 MobiDBLite consensus disorder prediction 232 256 - -
Apr4g1554 448 MobiDBLite consensus disorder prediction 1 41 - -
Apr4g1554 448 SMART finulus 262 311 IPR011598 GO:0046983
Apr4g1554 448 Gene3D - 250 319 IPR036638 GO:0046983
Apr4g1554 448 Pfam Helix-loop-helix DNA-binding domain 263 305 IPR011598 GO:0046983
Apr4g1554 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
Apr4g1554 448 MobiDBLite consensus disorder prediction 205 224 - -
Apr4g1554 448 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 63 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1554 Apr-Chr4 16972668 16976431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1554 93 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.897 6.05e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1554 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1554 - - gmx:100804797 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1554 4 16972668 16976431 Apr4g1554 4 16972668 16976431 ECH
Apr4g1554 4 16972668 16976431 Apr6g1382 6 20897182 20901537 ECH
Apr4g1554 4 16972668 16976431 Apr6g1382 6 20897182 20901537 PCT