Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1545 ATGTCCATCTTGCCCTCACAAACCCAAGCCGCATCTTCGTCTTCTTCCTCTGCGCCATCTCCTAACCCTAATCCCCAACATGGAATCCCAATCCATTCTCTTCCTCAACCCTTCTCTTCTCTTTCCCCACCACTCAGCCTCGCTTTCGGATCTCTCCAGATCTCCGATAACCCAGGTCCATCGACTCCAGCTGCACAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTGGGGTCTCCAAGTGACATGAAGGTTTCACCCCAGCAAAACTCTAGAATGCATTCTAGGAGTTACTCCAGAAGACGGATAGGAGCGGTTTCTACTCATAGACATCAACAAACTCCTGGGTCTCTGAATTCTCACGGAAGTGCCCCTTCAGCAGGGAGGAAAGCTCAGATGGTGAATGGGAATTACTTGCTGAATTTTCATTATGACCCAATATCTCGTTCACAACCAAGGGGTCCTCCTCCTCCCCCTACATCAAGAAGGCAGCGGAAGAGGAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGCTGGATTCGGGAAATTATTCGCCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTTACTCCCATTCCAGTTCAGTGTCCAATTTGTTTGGAGCGTCCACTGTGTCCACAAATAACCTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTGTTATTAGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGATATCTGCCAAGGATTTATATACTCTCCACATCACAGACGTCAAACAGTATGGAGTGGGAGATAATGTTGAGTTCACCTTTTTAACAAGGAAAAAGGATTCATTTACTCTGTCACATAAAAATAAAAAAGGGACAGATGTCACATCACATGGCGATGGAGATTTATGTGATCCCTTTTGCAAGTTCACTCTCACGTCAGATGTGGATCTCTCCGTGAGACATGCAATATCAGATCTGGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAACTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAATGAGCACAGGTCTTGTGACAGTGAAAAATCTTCTAAGCTTATTGATTATGGACATCAGATACCATCAACAGATGGAAATGCTGTGGATACTGATGATGAAAATTGTTCTAATGGATCAAGAACTTCCTCTACAGATTTCCATGACCAAAGCAAGGTTATAATGTTGGATAAGTCTATTGCTGAAGCCTGTTCAGATAATACCTTGGATGTGGAGAAAGAATTAATAGAGCAGGAAGTGAATTTATCTTCTTCATATGAGGACAAAAATGGTATTGAAAGGCATTCAAATGGCACCGGAGATGCCAAGGAAAATGATTCATACAATTTCTACCAGTTATTCACCATGCTCTTATTTCAGGCTGCTGATGGTCAACATCTAATTCTTCATCCTCTAAACATGAAGTGTTTACTTCACCATTATGGGAGCTATGATATGCTTCCGCACAGAATAAGTGGAAGGATCCTGCAATTGGAGACAATTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCTTAAGTCATTTTCCTTTGACCACAACATTTCAGCTTTGCGAAGTTGATTTGAGTGAGATGCTGCCTCCAGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAAAGGAAGCAGCTTGCAAAAAAGGAACGGAAGGAAAAGATAAAGGCTGAAGCTACTTCTACATATTCTCTTCCCATACCATTGAATTATCAGCTTTCTTCTCGTGAATCACCTCCGACATTCTCCATGGACGACTTTGAAGCTCTGGGAAATTCAACTATGTCATCAAGTCCTCCAGTTGTTGGGGAGAGAAAATCGTTCTCAAATGTTACTAGACTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTACAAATTCAAGAAACAAGTGGTCTACCTAATACCAATATGACCACAGATTCTTCTGCTACAACGGGTTTGAGAAACGGGGAGACACAATCATACTCCCACGTGATATCAAGAGCTGAATCAAATACAAGCTTGAATGTGCCAAAGACAAATGACTTGGGGAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGTAGGCGTTATTGA 2253 0.4234 MSILPSQTQAASSSSSSAPSPNPNPQHGIPIHSLPQPFSSLSPPLSLAFGSLQISDNPGPSTPAAQDSGGSSEKVTELGSPSDMKVSPQQNSRMHSRSYSRRRIGAVSTHRHQQTPGSLNSHGSAPSAGRKAQMVNGNYLLNFHYDPISRSQPRGPPPPPTSRRQRKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYFTPIPVQCPICLERPLCPQITSCGHIFCFPCILQYLLLGEEDHKGDCWKRCPLCFVMISAKDLYTLHITDVKQYGVGDNVEFTFLTRKKDSFTLSHKNKKGTDVTSHGDGDLCDPFCKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWNEHRSCDSEKSSKLIDYGHQIPSTDGNAVDTDDENCSNGSRTSSTDFHDQSKVIMLDKSIAEACSDNTLDVEKELIEQEVNLSSSYEDKNGIERHSNGTGDAKENDSYNFYQLFTMLLFQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETITQSEAMRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEALAPFMDEIKKRANQRKQLAKKERKEKIKAEATSTYSLPIPLNYQLSSRESPPTFSMDDFEALGNSTMSSSPPVVGERKSFSNVTRLGFAAGHDSPSLQIQETSGLPNTNMTTDSSATTGLRNGETQSYSHVISRAESNTSLNVPKTNDLGKKGKKPNRVLLSTAGGRRY* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1545 750 MobiDBLite consensus disorder prediction 675 750 - -
Apr4g1545 750 MobiDBLite consensus disorder prediction 676 727 - -
Apr4g1545 750 Coils Coil 586 610 - -
Apr4g1545 750 PANTHER RING FINGER 10 FAMILY MEMBER 90 746 IPR039739 -
Apr4g1545 750 CDD RING-HC_RNF10 220 267 - -
Apr4g1545 750 SMART ring_2 220 266 IPR001841 -
Apr4g1545 750 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
Apr4g1545 750 MobiDBLite consensus disorder prediction 146 169 - -
Apr4g1545 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 281 IPR013083 -
Apr4g1545 750 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Apr4g1545 750 MobiDBLite consensus disorder prediction 109 127 - -
Apr4g1545 750 MobiDBLite consensus disorder prediction 400 428 - -
Apr4g1545 750 SUPERFAMILY RING/U-box 219 272 - -
Apr4g1545 750 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g1545 750 MobiDBLite consensus disorder prediction 31 95 - -
Apr4g1545 750 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Apr4g1545 750 MobiDBLite consensus disorder prediction 407 428 - -
Apr4g1545 750 MobiDBLite consensus disorder prediction 1 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1545 60 700 C3H Transcription Factor Family AT3G26730 52.388 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1545 - - gmx:100798764 1166.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1545 4 16812216 16820795 Apr4g1545 4 16812216 16820795 ECH