Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1540 ATGATGGAAAATAATGAGACACTGTACCCAGAGAAAAGAATTGGCAACATTCCAGGTATTGAGGTTGGACATCAGTTCTATTCTCGTGCTGAAATGGTGGTAGTTGGTTTTCATAGCCATTGGTTAAATGGCATAGATTATATGGGCTTGTCCTATTCTAAAGTGCACAGCAACTATAAATTCCCACTTGCTGTTGCCATTGTTTTGTCGGGCATGTATGAAGATGATCTTGATAATGCCGAGGATATTGTATACACTGGTCAAGGTGGGCATAATTTGACTGGTGATAAGCGTCAAATTCGGGATCAAAAGTTGGAACGTGGTAATTTGGCTCTCAAGAATTGTGTTGAGCAAGGTGTGCCTGTAAGGGTTATTCGTGGTCATGAATCTTCAAGCAGTTACACTCGTAAAGTGTACACATATGATGGTTTGTACAAGGTTGTCAAATATTGGGCAGAAAAAGGAATATCTGGATTTACAGTCTACAAGTTTCGACTTAGGAGGCATGAAGGGCAACCTACATTAACCACAAATCAGGTTTATTTTACTTATGGACGTGTACCTCAAACTCTAGCAGAAATACGAGGATTGGTTTGTAAGGATATTACTGGAGGTCAAGAAGATATGCCCATTCCTGCTACAAATTTGGTTGATGATCCCCCTGTTCCACCAACAGGTTTCAGGTATCTTAAGTCTGTTAAGGTTGCAAAAAATGTGAAGCTTCCCATGAATGCCATTGGATGTAAATGCAAAGGGAAATGCAATGATCCAACAACTTGTGAATGTGCATTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGGATGGTGACAGGTTAATTGAAGCTAAAGATGTCGTTTTTGAATGTGGTCCCAAATGTGGTTGTGATCCTGATTGTTTGAACCGAACATCTCAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGTACTGCAAAAAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACTGGAATACTTGCTAGGACGGAAGATATGGACAGTGTGTTAGAAAACAATTATATTTTTGAGATAGATTGCTTGCAAACGATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCACAAAATGGAGCATTTGCTGCGAGTCTTTTGGACAAATATGATGACCCAGGTTCTGAAAGCATTCCAGAGTTTTGCATTGATGCAGGATCTACAGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAACCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAGATTGGCTCGTGTAATGTTGTTTGCTGCCGATAACATACCCCCTTTGCAGGAGTTGACTTATGACTATGGTTATGCGCTTGATAGCGTCTTGGGCCCCGACGGGAAGACCAAGCAAATGCCTTGCTATTGTGGAGCCCCAGGCTGCAGGAAGCGATTGTTCTAA 1473 0.4162 MMENNETLYPEKRIGNIPGIEVGHQFYSRAEMVVVGFHSHWLNGIDYMGLSYSKVHSNYKFPLAVAIVLSGMYEDDLDNAEDIVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVEQGVPVRVIRGHESSSSYTRKVYTYDGLYKVVKYWAEKGISGFTVYKFRLRRHEGQPTLTTNQVYFTYGRVPQTLAEIRGLVCKDITGGQEDMPIPATNLVDDPPVPPTGFRYLKSVKVAKNVKLPMNAIGCKCKGKCNDPTTCECALRNGSDFPYVSRDGDRLIEAKDVVFECGPKCGCDPDCLNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQNGAFAASLLDKYDDPGSESIPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVMLFAADNIPPLQELTYDYGYALDSVLGPDGKTKQMPCYCGAPGCRKRLF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1540 490 Pfam SAD/SRA domain 14 172 IPR003105 -
Apr4g1540 490 Pfam Pre-SET motif 203 303 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g1540 490 ProSiteProfiles YDG domain profile. 15 168 IPR003105 -
Apr4g1540 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 16 489 - -
Apr4g1540 490 ProSiteProfiles Post-SET domain profile. 474 490 IPR003616 -
Apr4g1540 490 SMART preset_2 199 295 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g1540 490 ProSiteProfiles Pre-SET domain profile. 246 308 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g1540 490 SMART G9a_1 10 172 IPR003105 -
Apr4g1540 490 Gene3D - 1 185 IPR036987 -
Apr4g1540 490 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 490 IPR025794 GO:0016571
Apr4g1540 490 SMART PostSET_3 474 490 IPR003616 -
Apr4g1540 490 Gene3D SET domain 194 490 IPR046341 -
Apr4g1540 490 SUPERFAMILY PUA domain-like 1 188 IPR015947 -
Apr4g1540 490 ProSiteProfiles SET domain profile. 311 460 IPR001214 GO:0005515
Apr4g1540 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 16 489 - -
Apr4g1540 490 SUPERFAMILY SET domain 195 467 IPR046341 -
Apr4g1540 490 SMART set_7 311 466 IPR001214 GO:0005515
Apr4g1540 490 Pfam SET domain 322 460 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1540 Apr-Chr4 16712660 16728753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1540 1 490 EF-hand Containing Proteins AT5G13960 66.329 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr4g1540 SAD_SRA 1.5e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1540 K11420 - aprc:113863063 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1540 4 16712660 16728753 Apr4g1540 4 16712660 16728753 ECH