Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1537 ATGCAGGACCCATCCCAGCAGCCTTTAAATCAAGGAAATATTGCTCGAAAGAGACACTATAGAGGTGTTAGGCAGAGACCATGGGGCAAATGGGCTGCAGAAATTCGTGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGCACATTTGACACGGCAGAGGCTGCAGCTGCTGCATATGATGTTGCTGCCTTGAAGTTCAAAGGATCAAAAGCCAAGCTCAATTTTCCAGAACACGTTCTTCTCACTTCAACATCACCATGTCTCACTGCTACAACTGCTACTGTTAATGCTACTATTGCTACGGCTGTTGCTTCTCCTACTACTACTAATAATAATAATGTTTCTTCAGCTCTTGCATCTCCTGCATCACTACTACCACAACAGGTTTATCAACCTCTTCCACCGTCTCCATTACTATCATCATCAGAAGAAGGGTTCCCGAACCTAATGCAGTACGCGCAGCTGCTAAGGAGTAGTGATGACAATGATCTACAACGGGTTGCTTTGGGCCTTCATCATTATCACAATGATCCATTTCTCGATTCAACTTCTTCAACATTGTTTTCATCATCGACAGCTTATGTGGGTGTGCATGATCATCAACCGCAGGGTGGAGATGGCACGAGTGCTCCCAAGGGGAGAGAATATTTTGGTTCGAGTGGTTCTTGTTATTTTGAGGGGAGTGGTTCTCATGACAAGAATTGA 705 0.4482 MQDPSQQPLNQGNIARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDVAALKFKGSKAKLNFPEHVLLTSTSPCLTATTATVNATIATAVASPTTTNNNNVSSALASPASLLPQQVYQPLPPSPLLSSSEEGFPNLMQYAQLLRSSDDNDLQRVALGLHHYHNDPFLDSTSSTLFSSSTAYVGVHDHQPQGGDGTSAPKGREYFGSSGSCYFEGSGSHDKN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1537 234 MobiDBLite consensus disorder prediction 1 24 - -
Apr4g1537 234 PANTHER DNA-BINDING DOMAIN 5 215 IPR044808 GO:0003700|GO:0009873
Apr4g1537 234 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Apr4g1537 234 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 5 215 - -
Apr4g1537 234 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Apr4g1537 234 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Apr4g1537 234 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Apr4g1537 234 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Apr4g1537 234 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Apr4g1537 234 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Apr4g1537 234 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1537 Apr-Chr4 16659586 16661424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1537 2 85 AP2-EREBP Transcription Factor Family AT5G61890 77.273 1.67e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g1537 AP2 2.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1537 4 16659586 16661424 Apr2g1118 2 17448730 17452169 ECH
Apr4g1537 4 16659586 16661424 Apr4g1537 4 16659586 16661424 ECH
Apr4g1537 4 16659586 16661424 Apr6g1384 6 20994927 20997090 ECH
Apr4g1537 4 16659586 16661424 Apr6g1316 6 18709066 18710936 PCT
Apr6g1384 6 20994927 20997090 Apr4g1537 4 16659586 16661424 PCT