Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1520 ATGAACCAATATAAGACGTCGTCTAAGGCGAAGAAGAAGCAAACGACAACGACACAAGAGGTCCAGCATACGGCATGGGGAGGAAGGTATCTTGGAGTAAGGAGGAGGCCATGGGGAAGGTATGCGGCAGAGATTCGAGACCCTTCCACAAAGGAGAGACATTGGTTGGGCACTTTCGACACCGCAGAGGAAGCTGCCCTCGCATACGACAGGGCAGCACGCTCCATGCGCGGGTCACGTGCCCGCACCAACTTTGTCTACGTGGACACTCCACCTGGCTCATCCGTCACCCCAATCCTCTCCCCCGACCAACAACCTCTCCCTCTTCCCCAACAACCCGACCCGGTTCAAACATTCGACCCGGTCGGCCTCCTCGGGATTGCGTCCGGTTCTTTCTCGTACGGTTATGGACACGGCGACCAATATAGTACCCAAGGTGCTCCTGCTGCAGCCAGCGTGGCAGGTTCCCATTTCAGCCAACAGGTGTTTCTCGATGATGATAATAATAATAATAATAACAATAATAATAGTAGTGGTAGCACGATAGAGCTTCCTCCTTTGCCACCGGATATTACCAGCTCTATGGGTTATGAGATGGAGCAGAATCAAGGGTTTTATAATAGCGGTTATTATTGGGAGCACAACGTTGAGGATAATTTTTACATGCATAGGAGTCCAGTGTTGAGCGAGATGGCATCAGTGTCAGAGAATATTAATGTGGCAGCAGAGCCTGAAGTTTTTTATTTCGGGAGCTCCTCTTATTTCTTCTGA 771 0.5032 MNQYKTSSKAKKKQTTTTQEVQHTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYVDTPPGSSVTPILSPDQQPLPLPQQPDPVQTFDPVGLLGIASGSFSYGYGHGDQYSTQGAPAAASVAGSHFSQQVFLDDDNNNNNNNNNSSGSTIELPPLPPDITSSMGYEMEQNQGFYNSGYYWEHNVEDNFYMHRSPVLSEMASVSENINVAAEPEVFYFGSSSYFF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1520 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 7 256 - -
Apr4g1520 256 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Apr4g1520 256 MobiDBLite consensus disorder prediction 165 183 - -
Apr4g1520 256 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Apr4g1520 256 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Apr4g1520 256 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Apr4g1520 256 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g1520 256 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Apr4g1520 256 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Apr4g1520 256 MobiDBLite consensus disorder prediction 165 186 - -
Apr4g1520 256 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 256 - -
Apr4g1520 256 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Apr4g1520 256 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1520 Apr-Chr4 16223030 16223800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1520 6 251 AP2-EREBP Transcription Factor Family AT5G13910 45.161 2.86e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g1520 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1520 K09286 - gmx:100792421 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1520 4 16223030 16223800 Apr4g1520 4 16223030 16223800 ECH
Apr4g1520 4 16223030 16223800 Apr6g1392 6 21209090 21209905 PCT