Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1516 ATGAGTTTTCAAGATATCCAAGGTGGGCCCAACCCTCCCTCTCGCCGAAACCAGTCACCGTCTCAGGCCGTCGCTGCCGGAATTTTCCAGATCAACACCGCCGTCGCTACTTTCCGGCGACTCGTCGATGCCGTTGGAACCGTCAAAGACACTCCCGAACACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAGCTGGTGAAGGATACTTCTTCTAAGCTCAAATCCTTGACTGAATCTGATCGTGATGCTAATGCCAATGCTAGTAAGAAAATTGAAGATGCTAAACTTGCAAGAGATTTCCAGACCACATTACAAGAGTTCCAAAAAGTACAGCAGCTTGCTTCGGAGCGCGAATCGAGTTACACCCCTGCTGCTCCTTCTTCTCCTTTACCAACAAGCTCCGGCCCCGGTGAAGCATCAGTTGGGATAGATGTGGAAAACCAACCTTTCATCAGAGAGCAGAAGAGGCAAGAGATACTTCTGTTGGATAATGAAATATCCTTCAACGAGGCCATGATTGAAGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATAGGACAAGCAAATGAAATATTCAAGGACCTAGCTGTTCTTGTTCATGATCAGGGTGTTGTTATTGACGACATTCAATCAAACATCGATGCTTCTGCTGGTGCAACAACCCAAGGAAAGGTCCAGCTAGCCAAGGCTTCCAAAAGTGTGAAATCCAGAACCTCATGGTGTTGGTGGGTGCTTGTAATTTTTGTGGTTGTGCTGGTCATCCTACTTCTAGTACTCATTCTTTAG 801 0.4669 MSFQDIQGGPNPPSRRNQSPSQAVAAGIFQINTAVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQLVKDTSSKLKSLTESDRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASERESSYTPAAPSSPLPTSSGPGEASVGIDVENQPFIREQKRQEILLLDNEISFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATTQGKVQLAKASKSVKSRTSWCWWVLVIFVVVLVILLLVLIL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1516 266 MobiDBLite consensus disorder prediction 115 145 - -
Apr4g1516 266 PANTHER SYNTAXIN 15 265 IPR045242 -
Apr4g1516 266 MobiDBLite consensus disorder prediction 115 138 - -
Apr4g1516 266 Pfam SNARE domain 210 261 IPR000727 -
Apr4g1516 266 SMART tSNARE_6 168 235 IPR000727 -
Apr4g1516 266 Gene3D - 167 266 - -
Apr4g1516 266 CDD SNARE_Qa 176 234 - -
Apr4g1516 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Apr4g1516 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Apr4g1516 266 Coils Coil 176 196 - -
Apr4g1516 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Apr4g1516 266 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g1516 266 Gene3D - 13 130 - -
Apr4g1516 266 PANTHER SYNTAXIN-22-LIKE 15 265 - -
Apr4g1516 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1516 Apr-Chr4 16150900 16153771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1516 1 253 SNARE and Associated Proteins AT5G46860 59.533 1.69e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1516 - K08488 gmx:100787141 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1516 4 16150900 16153771 Apr4g1516 4 16150900 16153771 ECH