Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1489 ATGTTCATCCCCACCAAACCCCTTCAACATTTAGCCACCCAAAGCAAATCAATCAAACACATGGGAACCCCTCAATCCAATTTGCCACCAGGTTTTAGGTTCCACCCCACCGATGAAGAGCTCATTCTTCACTACCTTAGGAAAAAGGTTGCATCCTTGCCCTTACCCGTTTCCATTATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGATTTGCCAGCTAAGGCTACGTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCTCGAGACCGCAAGTACCCAAATGGTGCAAGGCCAAACAGGGCTGCTGCTTCAGGGTATTGGAAGGCCACTGGCACGGATAAGACCATAGTGACATCATTGATTGGAGGAGGAGCCCAAGAGAACATTGGTGTGAAGAAGGCTTTGGTATTCTACAAAGGAAGACCCCCAAAGGGTATCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGACTCATCTATGAGGTTGGATGATTGGGTACTGTGCCGGATTTACAAAAAGTCCAAATATTCTGTATCATCTACAGAGACACCAACAGGGGTGGGTGAGGTAGATCAAGCTGAGGAACACTTATTTAAAGATACCCTTTTGCCAATTTCAAAATCTCCAACCATTTCTCAGAACAACACATTGATATCTCAGAAATCTGTGTCCTTTTCCAACTTGTTGGATGCCATGGACTACTCCGTTCTGAGCAGTTTCTTATCTGAGAACCATTCAAACCCACCAGGGATTGGAACAAGTGCTGGCTTCAATAGTGGGAATTTGGATCACCAATCTTCCCCCATCAACAACTATACCAATAGTTACATGTTTCAGAAGAACCCACAATCGAACCCTTCAGTCCCCAGCTTGGAGAATATCAGGCCAAAGCGCCAATTTTCAAACATAGATGAAGACACTTTGTACCCATCAAAAAAATACCTTAGTTCCTCTTGCAACTTCCCTAGCATCAACGCTCAATATGATAACCCCCAATGGAACTACCACATGAAGCAGTTACTTCTCGGTCCTCATCTTCAATTTCAGGGATAA 1092 0.4386 MFIPTKPLQHLATQSKSIKHMGTPQSNLPPGFRFHPTDEELILHYLRKKVASLPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLIGGGAQENIGVKKALVFYKGRPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKYSVSSTETPTGVGEVDQAEEHLFKDTLLPISKSPTISQNNTLISQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGIGTSAGFNSGNLDHQSSPINNYTNSYMFQKNPQSNPSVPSLENIRPKRQFSNIDEDTLYPSKKYLSSSCNFPSINAQYDNPQWNYHMKQLLLGPHLQFQG* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1489 363 ProSiteProfiles NAC domain profile. 28 186 IPR003441 GO:0003677|GO:0006355
Apr4g1489 363 SUPERFAMILY NAC domain 21 186 IPR036093 GO:0003677|GO:0006355
Apr4g1489 363 PANTHER OS01G0104200 PROTEIN 20 298 - -
Apr4g1489 363 PANTHER NAC TRANSCRIPTION FACTOR 56 20 298 - -
Apr4g1489 363 Pfam No apical meristem (NAM) protein 29 159 IPR003441 GO:0003677|GO:0006355
Apr4g1489 363 Gene3D NAC domain 37 191 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1489 Apr-Chr4 15484363 15486512 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1489 24 363 NAC Transcription Factor Family AT3G04070 53.714 1.22e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g1489 NAM 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1489 - - vun:114194335 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1489 4 15484363 15486512 Apr4g1489 4 15484363 15486512 ECH