Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1487 ATGGAAGAGCCTGTTGTGGTGAACAAAGGTGAAGAGCCTCTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACTGATGAGGAGATAATCACTTATTATCTCACTGAAAAGGTGAAGAATAGTAGTTTCAGTGCAACTGCTATTGGAGAGGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCAAAGAAAGCCAAGATGGGGGAGAAAGAGTGGTACTTCTTCTGTCAAAAGGATAGGAAGTATCCAACAGGTATGAGAACGAATCGAGCAACAGAATCTGGGTACTGGAAGGCCACGGGAAAAGATAAGGAAATTTACAAAGGGAAAGGGAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGAGAGAAGACTAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTCGCAATTTACAACCTTCCTAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTTAAGAAGACCTCAATTCCTGGCCTTTTGAGAATTAACTCTATAGGGGATAATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGATCCTCCTTATGCTAACACCAACAACAAGTTTGCAGGTTACAGTGACCAAGACTTTAAGGGTTCAACAAACCCACTTTCATCAACTAAATCACAATCAGAGGGCTATTATCTTCCCAGCTTCTCCATCAACAATCAACACCAGCTTCTGATCAAGCCAGAAGACCACAGAACCTATGAGATTCCCACAATTAACTACTCCAACCAAGCCAATCTCGGCAACCCAATGGACAATAACACACTCTCACCCTCTCAAATTCGTAGTACCCAAAACCCAAGCTCCCCCTTGAACATGTTCTCTGATTACTACATGCACCAAAACAGGATGAAAAATTCACTCATGCCAAGTGTTGCAGGCTCAGGTTTTGGGAGCAATAGTAACCATGATCAAGCTATTCTAAGAGCATTTGCAGCAAAGAATAACGAGTACTACATAGGTGGATTGGACAATCAGTGCAAGATGGAACAGTTCTCTTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACTGACACATCCTCGGTGGTTTCAAAGCAAGACAACATGGGAAGAAATAGGGCATTGTACGAGGATCTTGAAGGTCCTTCATCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGATTACTGA 1248 0.4343 MEEPVVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVKNSSFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFAIYNLPKAAKDEWVVSRVFHKNTDVKKTSIPGLLRINSIGDNDLLDYSSLPPLMDPPYANTNNKFAGYSDQDFKGSTNPLSSTKSQSEGYYLPSFSINNQHQLLIKPEDHRTYEIPTINYSNQANLGNPMDNNTLSPSQIRSTQNPSSPLNMFSDYYMHQNRMKNSLMPSVAGSGFGSNSNHDQAILRAFAAKNNEYYIGGLDNQCKMEQFSSNHSQDTGLSNDRNTDTSSVVSKQDNMGRNRALYEDLEGPSSVAPLSDLECLQWDDY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1487 415 MobiDBLite consensus disorder prediction 359 387 - -
Apr4g1487 415 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Apr4g1487 415 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 372 - -
Apr4g1487 415 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Apr4g1487 415 MobiDBLite consensus disorder prediction 359 384 - -
Apr4g1487 415 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 372 - -
Apr4g1487 415 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Apr4g1487 415 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1487 Apr-Chr4 15459848 15462369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1487 1 250 NAC Transcription Factor Family AT5G18270 65.116 1.48e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g1487 NAM 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1487 - - aprc:113861501 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1487 4 15459848 15462369 Apr4g1487 4 15459848 15462369 ECH