Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1486 ATGGCTAGCAATTCTTCCACTCGTGGCCACATGCAGTTTGGATTACAAGGCACAGAGTCAATGCCCAGTGTTGTGGAGTCACCGGTCACCCTTTTGATTAAGCACCTTCCTGAAGCCATTCCTCATGACACACTTTCTCGAATCCTATCCAATTTTGGCGCTTCCTCGGTTCGGCCTTGCTGTAGTGGAAGGTTGAGAAATTGTGCTTTTGTGGATTTCAAAAATGACATGGTGGCATCTCAAGCACAACAGCAACTAAATGGGTATGCTTACCCTCCACCTGATGGAAATATACTGACCAACATTGTGAATGCTCTAATTGCTGTTCCCCGCTTTTACACTCAGGTTCTACACTTGATGAACAAAATGAACATTCCAGCTCCATTTCGAATGGCACTGCCGACACCTCCATTACCTCCAGAAGTACCAGCCCCACCACCACCTCCACCTCCTCCTCCTATAACTGTGATGAATCCTCGGTCTGCAGATTTGTCTGGCGATGAATCAGAGATGGAATCTTCAGATGAGGAGGATGGAGCAAGAACAGGAAAGTCTGGACAGAAGCGTGCTAGACGTGAGACCATTGTTGGCCCTGCCATTGATAAAGGTGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCCACCTTGGTCCCGAAAGAAATCCCAGTGATAAAAAGGAATCCTGTCTTAAAGATAAAAATTGCTCCCAAAGCAACCCTGAATGCACAGAAAGATGATGACACAGCAGAAGAGTCACAAGAGCCAGAAAAAGATATTCCAGATCCTAACAAATTTTTTACTCCAGATGAATTAGAGGGAGGAAAGTTGCCTCCCGAGGAAATCTTATCACTTCCAATGTTTAAGAGCTATACAGCTGGAAATCCGGCCCCTGTGTTGTACATTAAGAATTTGGCAAAAGATGTGGTTGCTGATGATTTCTATTTGATATTTGGGTCTCTGTTTGGAAGTATTGAGGCTGCTAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGAAGGATGCGGGGTCAAGCTTTTGTAACATTCCCCTCAATTGAACTGGCTCATCATGCTCTGAATCTAGTGAATGGATATGTTTTTAAAGGCAAGCCAATGATCATCCAGTTTGGTCGAAATCCTGGTGCTGCCAAGGGAACCTAA 1161 0.4496 MASNSSTRGHMQFGLQGTESMPSVVESPVTLLIKHLPEAIPHDTLSRILSNFGASSVRPCCSGRLRNCAFVDFKNDMVASQAQQQLNGYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPPPPPPPPPITVMNPRSADLSGDESEMESSDEEDGARTGKSGQKRARRETIVGPAIDKGVAHESVGVKPATLVPKEIPVIKRNPVLKIKIAPKATLNAQKDDDTAEESQEPEKDIPDPNKFFTPDELEGGKLPPEEILSLPMFKSYTAGNPAPVLYIKNLAKDVVADDFYLIFGSLFGSIEAAKSGLQVKLMQEGRMRGQAFVTFPSIELAHHALNLVNGYVFKGKPMIIQFGRNPGAAKGT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1486 386 Gene3D - 292 385 IPR012677 -
Apr4g1486 386 PANTHER UNCHARACTERIZED 23 88 IPR045164 -
Apr4g1486 386 PANTHER UNCHARACTERIZED 89 384 IPR045164 -
Apr4g1486 386 MobiDBLite consensus disorder prediction 243 265 - -
Apr4g1486 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 99 IPR000504 GO:0003723
Apr4g1486 386 MobiDBLite consensus disorder prediction 241 276 - -
Apr4g1486 386 MobiDBLite consensus disorder prediction 138 198 - -
Apr4g1486 386 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 89 384 - -
Apr4g1486 386 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 23 88 - -
Apr4g1486 386 CDD RRM2_RBM40_like 298 377 - -
Apr4g1486 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 89 IPR000504 GO:0003723
Apr4g1486 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 371 IPR000504 GO:0003723
Apr4g1486 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 379 IPR000504 GO:0003723
Apr4g1486 386 SUPERFAMILY RNA-binding domain, RBD 28 380 IPR035979 GO:0003676
Apr4g1486 386 MobiDBLite consensus disorder prediction 176 196 - -
Apr4g1486 386 MobiDBLite consensus disorder prediction 138 157 - -
Apr4g1486 386 Gene3D - 30 92 IPR012677 -
Apr4g1486 386 SMART rrm1_1 298 375 IPR000504 GO:0003723
Apr4g1486 386 SMART rrm1_1 30 101 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1486 299 375 Eukaryotic Initiation Factors Gene Family AT3G16380 33.766 1.01e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1486 K13157 - gmx:100818499 484.567