Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1482 ATGAACATGGATGTGTGCCAAAATGTATCAGTTTCCAGTGAGTGCCAGCAAGAGCAAGTCCTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCAGCTCAGAATACGGAAGTGGATGTTGGGTTGGAATGGCTTTCAGTTTTTGTTGAAGACTGTTTTTCCAGCCCTCCAAGTTGTGTCTTGGTACCTGCTAGTGTTCAGACAACAAGCACAAGCTCAAAACCTTTAGGCACATTGAAGAGACCTCAACAAAACGAGTCTTCGTTGCAAAATTTTGTGGTGCCCGGTAAGGCCAGAAGCAAAAGGAAAAGGCTTTCAGCCCCAAGAACCAAAGACCCTTTAAGCCTCTGGTCACACCATTTGAACCCACAAAATGAAGCCTTGAGTTCTGACCCTCCGCTTCTCAAACAGGCTTATTGGTTGGCTGATAGTGAACTTATTGTGCCTAAAGAAAAGGATGAGCAAGAGGTGACAACAAAAGAAGATGAAGTGGTGGAAAAAGGGACTAGGAGCAAGGAAAGTTTTGATGACTCTGAGTTTGAGATTAGCAATGGTCAAAATCCAATGCCAAGAAGGTGCACCCATTGCTTGGCTCAAAGGACCCCGCAATGGAGGGCAGGACCATTGGGTCCAAAGACACTCTGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGACCTGCCAAGAGTCCTACTTTTGTGAGCTATTTGCATTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTATGTCTTCCATTTCTAGTGAGCAGTAG 807 0.4585 MNMDVCQNVSVSSECQQEQVLAPSCSSSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSPPSCVLVPASVQTTSTSSKPLGTLKRPQQNESSLQNFVVPGKARSKRKRLSAPRTKDPLSLWSHHLNPQNEALSSDPPLLKQAYWLADSELIVPKEKDEQEVTTKEDEVVEKGTRSKESFDDSEFEISNGQNPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVMSSISSEQ* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1482 268 CDD ZnF_GATA 194 241 IPR000679 GO:0006355|GO:0043565
Apr4g1482 268 MobiDBLite consensus disorder prediction 154 181 - -
Apr4g1482 268 Gene3D - 184 258 IPR013088 GO:0006355|GO:0008270
Apr4g1482 268 MobiDBLite consensus disorder prediction 71 96 - -
Apr4g1482 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 253 - -
Apr4g1482 268 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 268 - -
Apr4g1482 268 MobiDBLite consensus disorder prediction 71 119 - -
Apr4g1482 268 Pfam GATA zinc finger 195 229 IPR000679 GO:0006355|GO:0043565
Apr4g1482 268 PANTHER GATA TRANSCRIPTION FACTOR 3 268 - -
Apr4g1482 268 SMART GATA_3 189 243 IPR000679 GO:0006355|GO:0043565
Apr4g1482 268 ProSiteProfiles GATA-type zinc finger domain profile. 193 225 IPR000679 GO:0006355|GO:0043565
Apr4g1482 268 MobiDBLite consensus disorder prediction 154 188 - -
Apr4g1482 268 ProSitePatterns GATA-type zinc finger domain. 195 220 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1482 Apr-Chr4 15308257 15309632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1482 44 257 C2C2-Gata Transcription Factor Family AT4G32890 41.176 5.48e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr4g1482 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1482 - - gmx:100786479 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1482 4 15308257 15309632 Apr4g1482 4 15308257 15309632 ECH