Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1456 ATGGAAATTCAATTCCAGCGACCAAACCTGCAGCATCAGAAAGCAGGCATTTCAATCACCAAAGGAGGGAAATTCAAAGGGAGAAACAGAAACAGCAACACAAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAGGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCAGCATGCCTTCTTCGCGGTTCCAACACTCGCACCAACTTCATTACTCATGTTTCCTTGGATTCGCCTCTTGCTTCTCGCATTCGAAATCTCCTTAACAACAGAAAAGGTATCAAAAAACAAGAAGATGCAAATGCTAACAATGCACCTGCTCCAAGAGTTAGCAACAATAGTTGTGCTAGTACTAGCACTGGTAGTAATTCAAGCAATAATGACAAATCTCTTTCTACTGTGACAACTCAAAATTCAAATCTGTTTGATGATGGTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGAGTTAGGTCCTCAATCCAATGCTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCTATTGCTCAAATATTGGACATGCCAAAGACTGATGGCTTGATTGATACAGTTGACTTGGAGCTTTCAGAATTTGACAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCACGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCACCCCTGTGCTCATTGTTCTGTTAA 804 0.4192 MEIQFQRPNLQHQKAGISITKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKQEDANANNAPAPRVSNNSCASTSTGSNSSNNDKSLSTVTTQNSNLFDDGYKPDLSNCREDFELGPQSNASWGFGPVFDRFPIAQILDMPKTDGLIDTVDLELSEFDRMKVERQISASLYAINGVHEYMETVQDSSETLWDLPPLCSLFC* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1456 267 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 254 - -
Apr4g1456 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 254 - -
Apr4g1456 267 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Apr4g1456 267 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Apr4g1456 267 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Apr4g1456 267 MobiDBLite consensus disorder prediction 114 165 - -
Apr4g1456 267 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Apr4g1456 267 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Apr4g1456 267 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Apr4g1456 267 MobiDBLite consensus disorder prediction 126 165 - -
Apr4g1456 267 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Apr4g1456 267 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1456 Apr-Chr4 15032497 15034052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1456 10 267 AP2-EREBP Transcription Factor Family AT5G19790 43.396 1.07e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr4g1456 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1456 K09286 - gmx:100796898 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1456 4 15032497 15034052 Apr4g1456 4 15032497 15034052 ECH