Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1440 ATGGACAGGCTCATAAGAGTAGACCCATCAAACACAGTCCCAATAAGAGTTGAACCAGGCCAAAAATGCCACGGTGAAATCACCCTACGCAATGTTATGTACACCATGCCAGTGGCATTCAGGCTTCAACCACTAATCAAAACCCGTTATACAGTGAAACCCCAATCAGGAATCATATCCCCCTTAGCCACACTGACCATAGAGATCCTTTACCACCTCCCACAAGGCTCCAATCTCCCTCACTCTTTCCCTCACTCAGAAGACTCTTTCCTCCTCCACAGTGTAGTAGTTCCTGGCGCTACCATCAAAGAACCTTCCTCTATGTTCGAATCTGTCCCCAGCGACTGGTTCACCCCAAAAAAGAAACAAGTGTTCATTGACAGTGGCATCAAAGTTATCTTCGTTGGGTCACTCATTCTTGCCCAACTAGTCTCACACGGTTCCATGGATGAAATCAGAGAAGTGCTCGAACACAGTGACCCATCATGGAAACCCGTTGACTCCGTTGACCCACAAGGCCACACACTCCTCCACTTAGCCATTTCACAAAGTAGACCAGACCTCGTTCAGCTACTCCTAGAGTTCAAACCGGACATAGAAGCCACAAACCGTTCTGGCTCTACACCACTTGAAGCAGCATGTTCTTCAGGAGAAGCATTAATAGTTGAGCTTCTCTTAGCTCACAAGGCCACAACAGAACGAACAGAATCATCCCCTTTAGGACCAATTCACCTTGCAGCAAGAGAAGGACACGTGGAGATTCTCAGGTTGATCTTACTCAAAGGTGCTAAAGTTGACTCACTCACAAAAGACGGAAACACAGCGTTACACCTTGCAGTTCTAGAAGGTAAAAGAGAGTGCGTTAAACTCTTGCTAGCAAACGCTGCAAGAACGGATATTCGTAATTCAAGAGACGGTGACACCCCTTTACACATAGCAGCAACAAGCGGGGATGAGAACATGGTCAAGCTTTTGCTCCAAAAGGGTGCAAACAAAGACGTGAGAAACATGTTGGGTAAAACAGCTTATGATGTTGCGGCGGAGAATGGACACGTGGGCATCTTCGATGCGCTGCGTTTTGGGGACAGTTTGTGCGTTGCGGCGAGGAAGGGTGAGGTGAGAAGCATTCAAAGGTTGATTGAGAGTGGTGCAGTTGTGAATGGGAGAGACCAACATGGGTGGACTGCGTTGCATAGAGCGTGCTTTAAGGGCAGAATTGATGCGGTTCGTGCTCTGTTAGAGAAAGGGGTTGATGTGGATGCCAAGGATGAAGAAGGGTACACTGCGTTGCATTGTGCAGTGGAATCAGGGCATGCGGACGTGGCAGAGCTTTTGGTTAAGAAGGGTGTGGATGTTGAGGCCAGGACGAACAAGGGTGTCTCTGCTTTGCAGATCGCTGAGTCACTGCACTATGTTGGGATCACTAGGCTGCTGCTTCATGGTGGGGCTTGTAGGGATACTCTGGGACACGTGGCGGAGTCCCATGGTAGGGTGGTTCCTGCTGTGGAGATGAAGATGATGATGAAGAAGAAGGTGGGAAGAACAAGAGAAATTCGGGGTAGCTTTGATCGTTCCACTCCTTTGGCCGTGCTCTAA 1596 0.4875 MDRLIRVDPSNTVPIRVEPGQKCHGEITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTIEILYHLPQGSNLPHSFPHSEDSFLLHSVVVPGATIKEPSSMFESVPSDWFTPKKKQVFIDSGIKVIFVGSLILAQLVSHGSMDEIREVLEHSDPSWKPVDSVDPQGHTLLHLAISQSRPDLVQLLLEFKPDIEATNRSGSTPLEAACSSGEALIVELLLAHKATTERTESSPLGPIHLAAREGHVEILRLILLKGAKVDSLTKDGNTALHLAVLEGKRECVKLLLANAARTDIRNSRDGDTPLHIAATSGDENMVKLLLQKGANKDVRNMLGKTAYDVAAENGHVGIFDALRFGDSLCVAARKGEVRSIQRLIESGAVVNGRDQHGWTALHRACFKGRIDAVRALLEKGVDVDAKDEEGYTALHCAVESGHADVAELLVKKGVDVEARTNKGVSALQIAESLHYVGITRLLLHGGACRDTLGHVAESHGRVVPAVEMKMMMKKKVGRTREIRGSFDRSTPLAVL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1440 531 Gene3D - 310 359 IPR036770 -
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Apr4g1440 531 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Apr4g1440 531 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 531 - -
Apr4g1440 531 Gene3D - 133 236 IPR036770 -
Apr4g1440 531 Gene3D - 237 309 IPR036770 -
Apr4g1440 531 SUPERFAMILY Ankyrin repeat 166 488 IPR036770 -
Apr4g1440 531 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Apr4g1440 531 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Apr4g1440 531 SUPERFAMILY PapD-like 2 149 IPR008962 -
Apr4g1440 531 Gene3D - 361 528 IPR036770 -
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Apr4g1440 531 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Apr4g1440 531 Gene3D Immunoglobulins 1 132 IPR013783 -
Apr4g1440 531 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Apr4g1440 531 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Apr4g1440 531 Pfam Ankyrin repeats (3 copies) 151 230 IPR002110 GO:0005515
Apr4g1440 531 Pfam Ankyrin repeats (3 copies) 364 455 IPR002110 GO:0005515
Apr4g1440 531 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 238 267 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 392 421 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 425 454 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 338 367 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 305 334 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 172 201 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 205 234 IPR002110 GO:0005515
Apr4g1440 531 SMART ANK_2a 271 300 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Apr4g1440 531 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Apr4g1440 531 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 531 - -
Apr4g1440 531 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1440 Apr-Chr4 14708821 14710416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1440 363 468 Ion Channels AT4G32500 34.906 3.20e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1440 - - gmx:100782232 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1440 4 14708821 14710416 Apr4g1440 4 14708821 14710416 ECH