Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1427 ATGGGATCGTTCTCCTCTACGCTCCTTCTTTTCTTTTTCTTCTTCTTCTTCACCTCATCACTCGCCAATCACCACAACCCTATCACAGTCAAAGGTGTTGATATTGAAAAGCCAGTTTTGGATATCTCCCCTCCTCCGCTTTCTGGGCATTCATCTTCTCAAGGGGTTAAAGACACTTTACGGTGTGAGCGTATTCGAGTATCTGGTATCTCTAGGTTGAAACTTGGGAGCTATGCTAATTCATTCCATATTACTTTGGCTCCATCTGTTTCGATCCCAGAGAGGTTGCATAACAAAATTCAGGTTTGTTTCCACAGGAATAATACACTTGGATGGTGTCAGTGTCAAAAGGATGAATGGAGGAGTGTACAAAAGGGGATCTGGAGTTCTGTTATGTCACCTTATGAAACTAGATATGTTGATGTGAGAATCAATGGAGAAATATTGGATTCTGTTACCGTTGCTCTTGAAGAAGATTTTCAGAAATGGCGCCTCATTTGTCTTGCACTGGGTTCATTACTGCTACTTGTAGCTCCAATTATTAGCAGTTGGGTTCCGTTTTATTACAGCAGTTCAATGGCTATAGGGATCTTTCTTGTCATCATAATCCTTCTTTTTCAGGGCATGAAGTTATTGCCAACTGGAAGAAAAAATATATTTTACCTTACCATATATGGATCAGTGCTTGGAGCTGGGTCATTTATTTTGCACCAATTCTCTTTGATCGTAAATTCAATTCTTCAGAGTTTTGGGTTGAATGAAGAGATGCACAATCCAGTTGCTATTTTTGTACTACTGGGCATCATCTTGGGTGGAGCTGCTTTAGGCTACTGGATTGTTAGGAGGTTTGTTATTTCGAAAGAAGATGGTAGTGTTGATGCTGGGGTTGCTCAATTTGTGAAATGGGCAATGCGCATTGTTGGAACCGCATTCATTTTGCAGAGCACACTTGATCCTCCTCTAGCAATTGGAGCCTTGGTCTCCTGTGGAGCTGTTTGCAAACTTATTTCTTCAATAAAATGGCTTCATGGATGGTATGAAGCCTCAGGAAACGACAATTATTCACTGCAATGGGTGAGAGGAACACGTGGTCGTGCTGAATTCCTTAGCAAGTCAACCCCTAAAGGAAAAGTTCGGAATAGCCCGGGAGAAAAAATTTGGAATAGCCCTAAAAGATCAGCTTGGTCTGACTCTCCTGTGAGAGGTGTTGTATCACCATCTTCTGGGATTTCACCACAATCTTCTGGGACTCAAATAGGGCAGGATTACTATTCAATCTTCCACAAGACCAGCAACAGAAAGAAGTTCACAAAGAAAGAGTGGGATGAATTCACAAGAGAATCCACTAAGCAGGCTCTAACAGACTCGCGGTCGGTGACGGAGACGGTGAACGGTTCGCACAAGTTCGTTATCAAGGGATACTCGTTGGCGAAGGGAATCGGAGTCGGAAAACACATCGCCAGCGAAACCTTCACCGTCGGAGATTACCAGTGGGCCATCTACTTCTATCCTGACGGCAAGAATCCCGAAGATAACTCCGCTTATGTCTCCGTCTTCATCGCTCTCGCTTCTGAAGGCACCGATGTTCGCGCACTCTTCGAACTCACCTTGCTTGATCAGAGCGGTAACGGCAAACACAAGGTTCATAGCCACTTCGATCGTTCTCTTGAGAGCGGACCCTACACTCTCAAATACCGAGGCAGCATGTGGGGGTATAAGCGTTTTTTTAAACGGGCTCAACTTGAGGCATCGACGTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGGGTTGTGGTGTCTTCCATAGATTGTTCTAAATTAAACACAATCCAGGTTCCTGATTCTGATATTGGAGCACATTTTGGCATGCTATTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGATGGAGAAAGGTTTCATGCACATAAGCTGGTTTTGGCTGCACGGTCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAAGATGATCATGACATAGTTGTTACTGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTTATAGATGATGAAGAGCTCTTTATGTCACGTTCATCTTTCCTGTCTTCAGTATCTGAATCATTTGCAGCAAAGTTATTAGCTGCTGCAGAAAAGTACGGTTTGCCAAGACTTAAGCTCATGTGCGAGTCTGTACTTTGTAAAGACATATCTATAGATTCTGTTGCCTATATTCTAGTTCTTGCTGATCGTTATCGTGCTTCAGAATTGAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAACTGTCCATTGCTGCAATCAGAATTGCTGAAGACTGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATAGGAGCGTAAGACAACAAACCTGGGAAAATGGAGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGATAGTAGTCCAGGGAAAGAAGCTTGA 2610 0.4284 MGSFSSTLLLFFFFFFFTSSLANHHNPITVKGVDIEKPVLDISPPPLSGHSSSQGVKDTLRCERIRVSGISRLKLGSYANSFHITLAPSVSIPERLHNKIQVCFHRNNTLGWCQCQKDEWRSVQKGIWSSVMSPYETRYVDVRINGEILDSVTVALEEDFQKWRLICLALGSLLLLVAPIISSWVPFYYSSSMAIGIFLVIIILLFQGMKLLPTGRKNIFYLTIYGSVLGAGSFILHQFSLIVNSILQSFGLNEEMHNPVAIFVLLGIILGGAALGYWIVRRFVISKEDGSVDAGVAQFVKWAMRIVGTAFILQSTLDPPLAIGALVSCGAVCKLISSIKWLHGWYEASGNDNYSLQWVRGTRGRAEFLSKSTPKGKVRNSPGEKIWNSPKRSAWSDSPVRGVVSPSSGISPQSSGTQIGQDYYSIFHKTSNRKKFTKKEWDEFTRESTKQALTDSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGDYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPDSDIGAHFGMLLENEEGSDVTFSVDGERFHAHKLVLAARSTAFETEFFNGMEEDDHDIVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLSSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILVLADRYRASELKSICLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDSSPGKEA* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1427 869 Pfam BTB/POZ domain 626 743 IPR000210 GO:0005515
Apr4g1427 869 CDD BTB_POZ_BPM_plant 620 742 - -
Apr4g1427 869 SMART BTB_4 634 745 IPR000210 GO:0005515
Apr4g1427 869 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 463 602 IPR008974 GO:0005515
Apr4g1427 869 SMART math_3 469 581 IPR002083 GO:0005515
Apr4g1427 869 MobiDBLite consensus disorder prediction 370 399 - -
Apr4g1427 869 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 449 817 IPR045005 GO:0016567
Apr4g1427 869 SUPERFAMILY POZ domain 613 745 IPR011333 -
Apr4g1427 869 CDD BACK_AtBPM-like 742 803 IPR034090 -
Apr4g1427 869 Pfam NEMP family 153 407 IPR019358 -
Apr4g1427 869 ProSiteProfiles BTB domain profile. 634 700 IPR000210 GO:0005515
Apr4g1427 869 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 449 817 - -
Apr4g1427 869 Gene3D Potassium Channel Kv1.1; Chain A 610 739 IPR011333 -
Apr4g1427 869 CDD MATH 465 598 IPR002083 GO:0005515
Apr4g1427 869 ProSiteProfiles MATH/TRAF domain profile. 464 598 IPR002083 GO:0005515
Apr4g1427 869 SUPERFAMILY TRAF domain-like 461 603 - -
Apr4g1427 869 Gene3D - 744 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1427 Apr-Chr4 14461289 14466265 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr4g1427 NEMP 1.1e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1427 K10523 - aprc:113860926 1661.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1427 4 14461289 14466265 Apr4g1427 4 14461289 14466265 ECH