Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1414 ATGGTGTACTGCGGTCACTGTGCCAAAAACGTCGCCGGCGAGCGAATCGATGACGGTTACTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTTCTATTTTGCTGAGGAGCCCTCCTTTGTTAAGAATGCCGCAGGACAGAGTAAATTAGCGGGCAATTATGTAAGAACAGTTCAACATGAGTTCTCTGCTGCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATGAAATATATAAGTTTTGGCCTTGGAGTGAATGACGAAAGTATGGCCGACCAAGCTTTGACTTTTTATAAAATAGCGCTTGACCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTCCGGCACAACAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAACGTTTACGTGCTAGGAGCAGTTTTCTTACAGCTTTGTGAAGTGTTAAGGCTTGGGGAGCACCCAATTGTTCAAAAGCCTATTGATCCTAGTCTTTTTATTCATAAATATACTAATAATTTGATAAAGCATGGAGGGAGTAAGCTTGTCTCTGATACTGCACTGAGCATTGTTGCAAGCATGAAGCGTGACTGGATGCAGACCGGGAGGAAACCCAGTGGATTATGTGGTGCAGCACTATACATATCTGCTCTTGCTCATGGTTTTAAGTGCTCTAAGCCAGATATTCTTAGAATTGTTCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGAATACCGAGTCTTCTAGCCTGACAATTGATGAGTTGAATACGATGGCAAAAGAGCATGAAAAAAATCCAATTGTAATGCCAAATGGTGAATTCAGAGACTGTACTTCAAAAGATCTACTGTGTGAGCACAAGGATAATGGAGTGCCTTATTTTGCTCTTGGATTATGTGAAGCATGCTATAAGGATTTTGATAAGCTCTCTGGAGGACTTGGTGGTGGTTTGGACCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGAATGAAAAAAACATCCGAGGAAATTGTCAATGAAACATGTGATTCGGAAGCATCAAATGGCCTGTTTGAAAGACACAGAGAAGATTTGCCTGCTGATGTGCCAGAATGTATTGGGGCTGATGTTGAGCACAGGGCCACTAAAGATGGTGAATATGATGAGTCGTATAATGAAGAAGAATCAGAAAATTTCTCTGATATCGATGATCAAGAGGTTGATGGGTATCTTCACAATGAGGAGGAGAAGCATTTCAAGAAGATAATATGGGAAAAAGTAAACCGAGAGTATCTAGAGGAGCAAGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGTGCTCATGAGGCAAAAAATTCAGGGCCTGCTCAATCTGCTGCAGAGGCCACTCTCCAAATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCCTGGGTGAATTATTTAATGAACCGGCAGATGTGAATAATTTCAAGAAACCGAAGAAAGTACAATTTGATCTACCCCTTGGTGATACCAATTTACAGTCCAAGGTTGAGGACAAAAATGATGATGAGAAGGGATTAGTGGATGAATTTGAAGATGAAGGTGAAGGTGATATGGGGGAGATGTATGAAAATGCGTGGAATACTGAAAATATGAATGGAAACTATTTCCCTGAGGATCATGGTTACAATTATAATGATGATGATTACTGA 1743 0.4091 MVYCGHCAKNVAGERIDDGYLCCGSCGRVLEDFYFAEEPSFVKNAAGQSKLAGNYVRTVQHEFSAARQRTLDRAYDEMKYISFGLGVNDESMADQALTFYKIALDRNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLRTNVYVLGAVFLQLCEVLRLGEHPIVQKPIDPSLFIHKYTNNLIKHGGSKLVSDTALSIVASMKRDWMQTGRKPSGLCGAALYISALAHGFKCSKPDILRIVHVCEATLTKRLVEFENTESSSLTIDELNTMAKEHEKNPIVMPNGEFRDCTSKDLLCEHKDNGVPYFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERMKKTSEEIVNETCDSEASNGLFERHREDLPADVPECIGADVEHRATKDGEYDESYNEEESENFSDIDDQEVDGYLHNEEEKHFKKIIWEKVNREYLEEQAAVAKSRKEMKQRRAHEAKNSGPAQSAAEATLQMLRTKRLSSKVNYDRLGELFNEPADVNNFKKPKKVQFDLPLGDTNLQSKVEDKNDDEKGLVDEFEDEGEGDMGEMYENAWNTENMNGNYFPEDHGYNYNDDDY* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1414 580 CDD CYCLIN 172 249 IPR013763 -
Apr4g1414 580 SUPERFAMILY Cyclin-like 172 265 IPR036915 -
Apr4g1414 580 Gene3D Single helix bin 402 456 - -
Apr4g1414 580 Gene3D - 64 164 - -
Apr4g1414 580 MobiDBLite consensus disorder prediction 517 548 - -
Apr4g1414 580 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Apr4g1414 580 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Apr4g1414 580 PRINTS Transcription initiation factor IIB signature 214 230 IPR000812 GO:0006352|GO:0070897
Apr4g1414 580 MobiDBLite consensus disorder prediction 389 408 - -
Apr4g1414 580 Gene3D - 173 265 - -
Apr4g1414 580 Pfam Brf1-like TBP-binding domain 409 498 IPR011665 -
Apr4g1414 580 Pfam Transcription factor TFIIB repeat 169 260 IPR013150 GO:0017025
Apr4g1414 580 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Apr4g1414 580 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 501 IPR000812 GO:0006352|GO:0070897
Apr4g1414 580 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Apr4g1414 580 SMART cyclin_7 76 158 IPR013763 -
Apr4g1414 580 SMART cyclin_7 176 260 IPR013763 -
Apr4g1414 580 CDD CYCLIN 74 143 IPR013763 -
Apr4g1414 580 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 501 IPR029529 GO:0000126|GO:0000995|GO:0006383
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1414 Apr-Chr4 14200825 14219455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1414 1 482 Inorganic Solute Cotransporters AT2G01280 42.115 6.10e-114 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1414 K15196 - gmx:100789154 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1414 4 14200825 14219455 Apr4g1414 4 14200825 14219455 ECH