Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1407 ATGAGTTCACTTTCACATCACTTCAACAATGGTGGTGAAGGTTTCAGTAGAGACATAAGTTTTTTCCCTTATTCTCTTCTTTTGAGTTCACAAGCTTCTCCTTTGTCTAAGACTACAAGGTTCATGAGTGATGCTAATGGGGTACAGGCTCCAAAGCCTGAGATGGGTCTACAGATTTTGAGCCCTCCAATGTTCCAACCACAAGAGAGCAGGGGAACAAAGAGACCCATCGATGAAGGGGGTGGGTTCTTAGGGGTTGAGAACAAAAATTTGTCTTTGAAACTTGGGGATGAAGTTGAAGCTAAAAGCTCTGCTTCAGGGAAAATTGGGTACACCAAACTTTGTGCTAGAGGTCACTGGAGGCCAGCTGAAGATGAAAAACTTAAGGAGCTTGTTGCTCAATATGGTCCTCAAAATTGGAACTTGATTGCGGAGAATCTCGACGGAAGATCAGGGAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGGATCAACAGAAGGGCTTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGGCTGCGCATAAAATGTACGGTAACAAATGGGCTATGATTGCAAGACTCTTCCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCGAGAAGGCACAGAGAACAATCTAGCATGTATAGAAGGAGAAAGGCCAGCGTTAGTGAAACCATTCCGAAAGGTTTGAAATTGACTCTCTCATCGAACAATGCTGCCAGTGAGTCAACCATCTCAAGCACCATTGACGAATCTGCCTCAACTTGCACTAACCTCTCCCTCACTCCCTCTTCAGCCAAACTAACTCCTATTGGACCTTTTGATAAACCAGGTCCACTTCTGAATCACCAAGGCCTTGGATCACTAAGGGGTCAATCTAAAGAAAGTGGGGTGGCAACGAGGGATGTGAACTATGACAAGTTTTTTGGTGCATGGAAGAGCACATGTAAGGCTGAAACTGTGGGAAAGCTGAAGGGGGTGGTGGTGGACCAGTCCAATTTTTCAGATTCAAACTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATCTCTCAATTTCTGGGGAAAGTGAAAATGTGGGTGATAATAAGCTTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACCTAG 1176 0.4439 MSSLSHHFNNGGEGFSRDISFFPYSLLLSSQASPLSKTTRFMSDANGVQAPKPEMGLQILSPPMFQPQESRGTKRPIDEGGGFLGVENKNLSLKLGDEVEAKSSASGKIGYTKLCARGHWRPAEDEKLKELVAQYGPQNWNLIAENLDGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQSSMYRRRKASVSETIPKGLKLTLSSNNAASESTISSTIDESASTCTNLSLTPSSAKLTPIGPFDKPGPLLNHQGLGSLRGQSKESGVATRDVNYDKFFGAWKSTCKAETVGKLKGVVVDQSNFSDSNSEVSVSESVATNRSNLSISGESENVGDNKLNMPFIDFLGVGAT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1407 391 PANTHER OS08G0435700 PROTEIN 93 391 - -
Apr4g1407 391 Gene3D - 170 237 - -
Apr4g1407 391 CDD SANT 120 161 IPR001005 -
Apr4g1407 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 163 IPR017930 -
Apr4g1407 391 CDD SANT 180 211 IPR001005 -
Apr4g1407 391 Pfam Myb-like DNA-binding domain 120 180 - -
Apr4g1407 391 ProSiteProfiles Myb-like domain profile. 164 214 IPR001005 -
Apr4g1407 391 PANTHER MYB PROTEIN-RELATED 93 391 - -
Apr4g1407 391 SUPERFAMILY Homeodomain-like 117 210 IPR009057 -
Apr4g1407 391 Gene3D - 117 168 - -
Apr4g1407 391 SMART sant 168 216 IPR001005 -
Apr4g1407 391 SMART sant 116 165 IPR001005 -
Apr4g1407 391 ProSiteProfiles Myb-like domain profile. 117 163 IPR001005 -
Apr4g1407 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 218 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1407 Apr-Chr4 14052426 14054027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1407 116 233 MYB Transcription Factor Family AT1G69560 86.441 1.08e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g1407 Myb_DNA-bind_6 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1407 K09422 - gmx:100791795 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1407 4 14052426 14054027 Apr4g1407 4 14052426 14054027 ECH