Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1399 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAAGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGACAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCCATGGAGCCCCACTCAGTATCAGACTCAACAACCAGTGGTCAATATTTACCAAAGAGCTTTAATGACAGAAGAAATTTAGATATCAGCAACAACATTAATCATGCCTCATCCGTTAGGCTTAGTCAGTCTCAGTCCTCCACATATGCCTCAAGCACTGAAAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCAAAGCCACTGAAGAGAACCCAAGATGAAGAGCTTCAAAGCAATGATGATAACTTTGGAAACAGTAATAAGGTAGTGAAGTCAACATCAGTGCCTGCTTTGAACCTTCAGCGTCAGCACAAAAGAACCAAAGATGAGCAAGAGGGTGGAGGAGATATAGTGTCTCATGACGAGTTTGATTCTATTCTTTCATTTGAGAACCTAAACAATGCTGCTTGGGATAAGTCCACTTGTGATTCTATGCCTGAAAAGAGTTCTGAACCTGCTCATGATCATGATATAGCTGCTGAGAGGAATAGGCAAAAATCTGAGAACAATAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAACGTTGGTCAAGTTGAGGAGATGATGGAGTTATCTCCTATCTTCTAA 975 0.4226 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAAMEPHSVSDSTTSGQYLPKSFNDRRNLDISNNINHASSVRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKRTQDEELQSNDDNFGNSNKVVKSTSVPALNLQRQHKRTKDEQEGGGDIVSHDEFDSILSFENLNNAAWDKSTCDSMPEKSSEPAHDHDIAAERNRQKSENNSAPPLSFLEKWLLDENVGQVEEMMELSPIF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1399 324 MobiDBLite consensus disorder prediction 188 243 - -
Apr4g1399 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr4g1399 324 CDD SANT 69 112 IPR001005 -
Apr4g1399 324 MobiDBLite consensus disorder prediction 268 288 - -
Apr4g1399 324 CDD SANT 16 61 IPR001005 -
Apr4g1399 324 MobiDBLite consensus disorder prediction 264 299 - -
Apr4g1399 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr4g1399 324 SMART sant 66 114 IPR001005 -
Apr4g1399 324 SMART sant 13 63 IPR001005 -
Apr4g1399 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Apr4g1399 324 MobiDBLite consensus disorder prediction 202 225 - -
Apr4g1399 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 316 - -
Apr4g1399 324 PANTHER TRANSCRIPTION FACTOR MYB60 1 316 - -
Apr4g1399 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr4g1399 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g1399 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g1399 324 Gene3D - 69 137 - -
Apr4g1399 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g1399 324 Gene3D - 13 66 - -
Apr4g1399 324 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1399 Apr-Chr4 13934695 13936499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1399 1 136 MYB Transcription Factor Family AT5G62470 82.609 5.66e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g1399 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1399 K09422 - gmx:100817854 515.768