Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1394 ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATCATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGCATTAACTGTAACACTCTGGGTCCGCAATATGTTTGTACGAATATTTGGACCTTCGTTTGTATGACGTGCAGTGGAATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACTTCGCAAGAAGTTGACTCTCTTCAAAATGGGGGTAATCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAGGCAGCGATTGCCTGATAGCAGTAATGTTGATAAAATAAGAGAGTTTATAAGGAATGTATATGTGGATCGAAGATATGCAGCAGCTAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGCCCTAGAATTCATGAAGATGATACAAGGCGTGCCAGTTCGTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGCTATGGAAAACAAACAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATAAGTAGTATTATTTATAGTCCTGGTCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAGGGGTCTGGTCCCAGAATCTCAGATTTTTCTGTGTCTAATGGTGGTGAGCAATTCAAATCTGATGTTCAGCGTTCTGGTGGCCATTCAAGTGAAGATGTGTGGTCTCATGCAATAAATACGTCTCTGGAAACTAACTCCAAGAGAGACGCAGACAGAATTCATCATCCACAGAGAACTACTTCACTGGGATCAACAGATAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGGCTTAGTTGATTTTTCCTCGGAACCTTTCCAGGCTTTTGGATCCCATCAAAATAAAGTGTCTTGTGCTTCACAACCTTTTGATCTGGGAAGTTCTGTTAGTTCAGATCTTTCCAAGACACCAGTGGCAACTGAACCATTCTCTTCATCAGCTTCATCTATTGACCTTTTTCAGTTGCCAGCTGTGCCCTCTCAGGCTACATCAGTGGATCTGTTTCAATCATCTGGTTTATCTTCAATTTCATCTTTCAACGAGAGTCAACCCACAAAAGCATCCCAATCCTCATCTGTTGACTTCTTTATGGATCTTTCTCAGCAGCCATCTGCTGCAACCTCAAATGAGAAGTCACTAGAGTTCTCTGTCCCCAAAAATGAAGGATGGGCAACATTTGATATGCCTCAGCTCACAACATCTACTGCACAAGTAGAAATTCCGACAGCAGTACCTTCAAGTGCCAATCCCTTGCAGGAAAGATTTGATCCATTTTCAAACTTAAATGCAAATATGCAATGGCCATCTTCTGAAACTTCTAGTATTAGTGTTCTGTCTTCAGTTACATCCAATTTATGGCACGATGACATGTGGAATGGAGAAGAGCAAGTTTCTGTTATGGCAACAAACACTCAAACTGAACAGCCATGGAATGCATTTAAAGATTCCAGTACCTCTGTTCCTGTGGATGTCCTTAATCAAGGATCAGAAATGCACAATCTTTCATCAAGTGATGATCAGTTTTTGAATTTAAGAGCTTCTGAGGGATCCAATAAAGGTGGGATGCAAGATGTTGCCCCTGTTGATGGGTTTGATCATGACCTTTCATCACATTTTGTTAATGGCTTACCATATCCTCCATCTGCATTTCCGCCTATGGGAGAGGTTCAGCATAATGAAGTCAACTGTAAATCAACTAACCCATTTGATTATCCTTATGACTCAGATGTAGAACATAATAATTTGTGCCAATTGCAATTCCTTGATGTCAGCTCTCTACAAGCTGCTCTGCCAGATTCCCAGCTATCATCCACCTTCCAAAGTGGAATTGACGAACCATGGCTACCTCAGAATACAGTGAACCCTTATATCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCGCCAAGTTCTCAAATACCGAACATCCAGACGCAGGGACCAGTTGCTTCTGTTGGGGGCAATCCCTTTGCATAG 2070 0.4213 MGSRKEEERNEKIIRGLMKLPPNRRCINCNTLGPQYVCTNIWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDSLQNGGNQRAREIYLKNWDFQRQRLPDSSNVDKIREFIRNVYVDRRYAAAKSSDKPPRDVQSPRIHEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQTAALTRKPGSDKVRYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVSNGGEQFKSDVQRSGGHSSEDVWSHAINTSLETNSKRDADRIHHPQRTTSLGSTDSNLSSLRSYSSGGLVDFSSEPFQAFGSHQNKVSCASQPFDLGSSVSSDLSKTPVATEPFSSSASSIDLFQLPAVPSQATSVDLFQSSGLSSISSFNESQPTKASQSSSVDFFMDLSQQPSAATSNEKSLEFSVPKNEGWATFDMPQLTTSTAQVEIPTAVPSSANPLQERFDPFSNLNANMQWPSSETSSISVLSSVTSNLWHDDMWNGEEQVSVMATNTQTEQPWNAFKDSSTSVPVDVLNQGSEMHNLSSSDDQFLNLRASEGSNKGGMQDVAPVDGFDHDLSSHFVNGLPYPPSAFPPMGEVQHNEVNCKSTNPFDYPYDSDVEHNNLCQLQFLDVSSLQAALPDSQLSSTFQSGIDEPWLPQNTVNPYISSAGQGGLTFMAAPPPSSQIPNIQTQGPVASVGGNPFA* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1394 689 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Apr4g1394 689 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Apr4g1394 689 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Apr4g1394 689 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Apr4g1394 689 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 689 - -
Apr4g1394 689 MobiDBLite consensus disorder prediction 122 148 - -
Apr4g1394 689 PANTHER ARFGAP/RECO-RELATED 1 689 IPR044820 GO:0005096
Apr4g1394 689 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Apr4g1394 689 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Apr4g1394 689 CDD ArfGap_AGFG 11 123 - -
Apr4g1394 689 Pfam Putative GTPase activating protein for Arf 12 124 IPR001164 GO:0005096
Apr4g1394 689 MobiDBLite consensus disorder prediction 257 280 - -
Apr4g1394 689 MobiDBLite consensus disorder prediction 122 162 - -
Apr4g1394 689 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1394 Apr-Chr4 13893406 13901798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1394 14 116 C2H2 Transcription Factor Family AT4G05330 35.965 9.66e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1394 K15044 - gmx:100817495 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1394 4 13893406 13901798 Apr4g1394 4 13893406 13901798 ECH