LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g1367	ATGGGAAGGAAGAGAAAGGTGGCACCCAAATCTTCTCAATCCGCTGAACCCCCTCTCAAACACCACCAACCCCAACCCTTACCAGACAATGCACCTCCCGAATACGAAGAAGTTGAAGAAGAAGTTGAGGAAGAAGAAGAAGAAGTTGAAGAAATAGAAGAGGAAGAAGAGGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGGAGACCAACAACAACAAGAAGAAGATGACGACGACGACGACGACCCTATCCAGAAGCTTCTAGAACCCTTAAGCAAGGACCAGATCCTCAACCTTCTCTGCGAAGCTGCCACCAAACACCGTGACGTGGCGGATCGGATCCGTAAGGCTGCCGACGAGGATCCTGTTCACCGGAAGATCTTCGTGCACGGCCTTGGATGGGACACCACCGCCGGAACCCTAATAGGTGCGTTCCGGCAGTACGGCGAGATCGAGGATTGCAAGGCGGTTACCGATAAGGTCTCCGGGAAGTCGAAGGGATACGGATTCATTCTCTTCAAGACGCGCCGGGGTGCCCGCAACGCGTTGAAGCAGCCGCAGAAGAAGATCGGGAATCGCATGACGGCGTGCCAGCTGGCGTCGATTGGTCCCGTCAGCCAGAGCCAGCAGCAGCAGCAGCAGCAGCAACAACAACCAGCTGCGGTGACGACTTCTTCGGCGCCGGTTTCGGAGTACACGCAGAGGAAGATCTATGTGAGTAACGTTGGAGCTGAATTGGATCCGCAAAAGCTTCTGGCGTTCTTTTCGCGGTTTGGCGAGATTGAGGAAGGGCCTTTGGGGCTTGATAAGGTCACGGGGAAGCCGAAAGGGTTCTGTTTGTTTGTTTACAAGAGTGCTGAGAGTGCGAGGAGGGCCTTGGAGGAGCCTCATAAGGAATTTGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTCCTAAGCCTGGGAAGTTGCAGCAGCATGGGAATCCTCAGGGTCAGAGGAACCAGTTTCAGAGGAATGACAGTGCTGGTTATGTCGGTGGTGGTAGTGGTGCTGCTGCTGCTGCGCAGCCGGGGCACCTAATGGCACCGGCTGGACCCGGAATTGGTTTTAATCAGGCTGCTGCTGCGCAGGCATTGAATCCGACTCTGGGGCAGGCGCTGACGGCGCTGCTTGCGTCTCAAGGAACATTGGGGCTGAGTAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTTAACCCTGGTGTTCCTGCTGCCGGGGCTGGAGTGCAGGGTGGTTATAGTGCCCAGCCAAATATAAGCCCAGGTGTTATTGGAGCATATGGGAATCAGGTTGGATTGCAGACGGCATACCCAAACCAACAGATAGGACAGGGTGGCTCTGGAAGAGGGCAATATGGTGGTGCTATTCCACATAAGTGCATCAGTCTTTTATTACTGGCCTGGTGA	1440	0.5403	MGRKRKVAPKSSQSAEPPLKHHQPQPLPDNAPPEYEEVEEEVEEEEEEVEEIEEEEEEEEEEEEEEEEGDQQQQEEDDDDDDDPIQKLLEPLSKDQILNLLCEAATKHRDVADRIRKAADEDPVHRKIFVHGLGWDTTAGTLIGAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSQSQQQQQQQQQQPAAVTTSSAPVSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPGKLQQHGNPQGQRNQFQRNDSAGYVGGGSGAAAAAQPGHLMAPAGPGIGFNQAAAAQALNPTLGQALTALLASQGTLGLSNLLGSIGTSAAVNPGVPAAGAGVQGGYSAQPNISPGVIGAYGNQVGLQTAYPNQQIGQGGSGRGQYGGAIPHKCISLLLLAW*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g1367	479	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	126	203	IPR000504	GO:0003723
	Apr4g1367	479	PANTHER	-	33	466	-	-
	Apr4g1367	479	SUPERFAMILY	RNA-binding domain, RBD	119	215	IPR035979	GO:0003676
	Apr4g1367	479	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	236	312	IPR000504	GO:0003723
	Apr4g1367	479	MobiDBLite	consensus disorder prediction	312	339	-	-
	Apr4g1367	479	PANTHER	GEO13361P1-RELATED	33	466	-	-
	Apr4g1367	479	Coils	Coil	35	77	-	-
	Apr4g1367	479	SMART	rrm1_1	237	309	IPR000504	GO:0003723
	Apr4g1367	479	SMART	rrm1_1	127	199	IPR000504	GO:0003723
	Apr4g1367	479	CDD	RRM_RBM24_RBM38_like	236	311	-	-
	Apr4g1367	479	SUPERFAMILY	RNA-binding domain, RBD	209	340	IPR035979	GO:0003676
	Apr4g1367	479	MobiDBLite	consensus disorder prediction	33	85	-	-
	Apr4g1367	479	MobiDBLite	consensus disorder prediction	322	339	-	-
	Apr4g1367	479	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	128	194	IPR000504	GO:0003723
	Apr4g1367	479	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	238	306	IPR000504	GO:0003723
	Apr4g1367	479	MobiDBLite	consensus disorder prediction	1	86	-	-
	Apr4g1367	479	Gene3D	-	45	204	IPR012677	-
	Apr4g1367	479	Gene3D	-	205	333	IPR012677	-
	Apr4g1367	479	MobiDBLite	consensus disorder prediction	209	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g1367	Apr-Chr4	13416425	13425490	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr4g1367	235	326	C2H2 Transcription Factor Family	AT2G19380	36.559	1.60e-10	61.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g1367	K12741		-	gmx:100784200	610.527