Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1359 ATGGAACACAATTTGGGTCAAGACACTGCAGCTGCATCTGGGTCCTTTGATAAGTCTAGGGTTTTAAATGTGAAGCCATTGAGGACTCTTGTACCTGTGTTCCCTTCACCATCTAATAATCCCTCTTCATCTTCAACTCCACAAGGTGGTGCTCCTTTTGTTTGTGCTTCTCCTTCTGGCCCTTTCCCTTCTGGTGTTGCACCTTTTTACCCTTTCTTTATCTCGCCCGAGTCCCAGAGGCTTTCTGAACAAAATGCGCAAACCCCGACTGGTCAGCGTGTGGCTGCTAACCCAATATCTTCTGCAGTTCCTATTAATTCATTTAAGAAACCAACTGGTGCTGCAAATGGAGATGCGGGCTCGTCGCGAAGGAATGCTAGAACTCGTAGACAGGTTGCGGAGGAAGTTGGCTATGGTAATGATGAGATGGTTGATGTTGGTGCTGAAGACGGAACTGGAGATAGGAGGTTAACGCGCAAATCACACAAGAAGGCAAAGGGACAGCAGACTGGTGGTTCTGTTGATGTTGATCCAGATGCAGTGGTTAACGATATTCTTAAAACACTTAACCCCATAGTTTTTGATGTACTAAATCAACCTGAAGGTGGCAAGGACTCAGTTGCATATACACTTATGATATATGAAGTGCTGCGAAGAAAGCTTGGACAAATTGATGATTCTACAAGGGACGTAGGTTCTGGAGCAAAACGGCCTGATTTGAAGGCAGGTACACTTATGATGAGTAAAGGGGTTCGGACTAACAGCAAGAAACGTATTGGAGCTGTACCTGGTATTGAGATTGGAGATATTTTCTTTTTCAGATTTGAATTGTGCCTAGTGGGTTTACATGCTCCTTCTATGGCTGGGATTGATTACATTGGTAGCAAAACCACTCAGGAGGAGGAGCCATTAGCTGTAAGTATTGTCTCATCTGGGGGGTATGAAGATAACGTGGAGGATGGGGATGTGTTGATTTACAGTGGTCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGACCAAAAGCTTGAAAGGGGTAATCTTGCATTAGAGAGGAGTCTTCATAGAGGTAATGATGTGAGAGTAATTAGAGGTATGAGGGATGTACAACATCCAACTGGGAAGGTATATGTCTATGACGGTCTTTACAAGATTCAAAATTCATGGGTGGAGAAATCAAAGTCTGGTTTCAATGTATTCAAGTATAAATTAGTCAGGTTGCCTGGGCAGCCTCAAGCATATATGATATGGAAATCCATTCAACAATGGACTGAGAAGTCTGCTTCAAGAGCAGGGGTTATATTGCCTGATCTTACTTCTGGGGCTGAAAATGTACCTGTTTGTCTTGTGAATGATATTGATAACGAGAAGGGCCCTGCGTATTTCACTTACATCCCAACTCTCAAGAATTTGAGGCCAACAGCTCCTGTGGAATCTTCTGTTGGGTGTTCTTGTGTTGGTGGATGTCAACCTGGCAGTTATAACTGTTCTTGCATTCAAAAGAATGGAGGCTATCTACCGTATTCTGCCGCTTCATTACTTGCTGACCTAGAATCTGTGGTATATGAGTGTGGTCATTCTTGTCAGTGCCCTTCTAATTGCCGAAATCGGGTTTCCCAAACTGGCTTGAAGCTTCGTTTGGAGGTTTTTAAAACCAAGGATAGAGGTTGGGGTCTTAGATCATGGGATTCTATTCGTGCAGGAACTTTTATATGTGAGTATGCAGGGGAAGTCATAGATAATGCTAGAGTAGAAGAGCTTGGTGGTGATAATGAAGATGATTACATTTTTGATTCTACTCGAATTTATCAGCAACTGGAAGTTTTTCCTGGTGATACTGAAGCACCAAAAATCCCATCCCCCCTTTATATTTCAGCAAGAAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCTGTCATACGTGAAAATAAGAATGAATCAGATCTCCACATTGCTTTCTATGCCATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGATAGTTCTTCCTCTCAAAGTAGGTCAGAAGAAAAAGAAATGCTTATGTGGATCTGCAAAATGTAGGGGTTACTTTTGTTAA 2121 0.4267 MEHNLGQDTAAASGSFDKSRVLNVKPLRTLVPVFPSPSNNPSSSSTPQGGAPFVCASPSGPFPSGVAPFYPFFISPESQRLSEQNAQTPTGQRVAANPISSAVPINSFKKPTGAANGDAGSSRRNARTRRQVAEEVGYGNDEMVDVGAEDGTGDRRLTRKSHKKAKGQQTGGSVDVDPDAVVNDILKTLNPIVFDVLNQPEGGKDSVAYTLMIYEVLRRKLGQIDDSTRDVGSGAKRPDLKAGTLMMSKGVRTNSKKRIGAVPGIEIGDIFFFRFELCLVGLHAPSMAGIDYIGSKTTQEEEPLAVSIVSSGGYEDNVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALERSLHRGNDVRVIRGMRDVQHPTGKVYVYDGLYKIQNSWVEKSKSGFNVFKYKLVRLPGQPQAYMIWKSIQQWTEKSASRAGVILPDLTSGAENVPVCLVNDIDNEKGPAYFTYIPTLKNLRPTAPVESSVGCSCVGGCQPGSYNCSCIQKNGGYLPYSAASLLADLESVVYECGHSCQCPSNCRNRVSQTGLKLRLEVFKTKDRGWGLRSWDSIRAGTFICEYAGEVIDNARVEELGGDNEDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYISARNEGNVARFMNHSCSPNVLWRPVIRENKNESDLHIAFYAIRHIPPMMELTYDYGIVLPLKVGQKKKKCLCGSAKCRGYFC* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1359 706 SMART set_7 545 686 IPR001214 GO:0005515
Apr4g1359 706 ProSiteProfiles YDG domain profile. 260 406 IPR003105 -
Apr4g1359 706 ProSiteProfiles Pre-SET domain profile. 481 542 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g1359 706 SUPERFAMILY PUA domain-like 242 425 IPR015947 -
Apr4g1359 706 Gene3D SET domain 428 705 IPR046341 -
Apr4g1359 706 Pfam SAD/SRA domain 259 410 IPR003105 -
Apr4g1359 706 SMART preset_2 435 529 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g1359 706 ProSiteProfiles Post-SET domain profile. 690 706 IPR003616 -
Apr4g1359 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 705 - -
Apr4g1359 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 705 - -
Apr4g1359 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 128 705 IPR025794 GO:0016571
Apr4g1359 706 SMART G9a_1 255 410 IPR003105 -
Apr4g1359 706 ProSiteProfiles SET domain profile. 545 680 IPR001214 GO:0005515
Apr4g1359 706 Gene3D - 243 427 IPR036987 -
Apr4g1359 706 MobiDBLite consensus disorder prediction 101 176 - -
Apr4g1359 706 Pfam SET domain 556 680 IPR001214 GO:0005515
Apr4g1359 706 Pfam Pre-SET motif 439 537 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr4g1359 706 SUPERFAMILY SET domain 444 703 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1359 Apr-Chr4 13325408 13331254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1359 1 705 Su(var)3-9 homologs AT1G73100 48.630 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr4g1359 SAD_SRA 2.2e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1359 K24405 - gmx:100805932 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1359 4 13325408 13331254 Apr4g1359 4 13325408 13331254 ECH