Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1351 ATGGAACAGCAGCAGCAGCGCCACGTCAGCACTAGCGGAGCTAGTAATCCTGTGCTCCGCTACCCAACCGTGCGCGCCACCTTCACCCTCCCCTTCGCGCGCCTAATCGCCGCCGACCGCCGCCGCCTTTTCCTCTCCGACTGCGCCGACCATCGATCGGACGACGAAGACGACGGCGACGGCGGAAACTGCGCGTACTCGCGGCCGGTGCTGGTTCTGGACATGGTGTGGAACCTGGCCTTCGTGGTGGTGGCCGCTGGCGTGCTTCTCTCCACGTTCCGTGAGCGACCTTCCACTCCTCTGAGACTCTGGCTCTGTGGCTACGCCTTCGAGTGCGTCGTACACATGGCTTTTGTGTACTACGATTATCGCACCTCAATTCGCGATTCCTTGTCTCACACTTCCTATAGCATTCTGAAGAAATTAGAGCCTATTAACACTCTGGCATCATCTGTTTGGTGGGTATTTGGATTTTATTGGATTGTTGTGGGTGGGCAAGCACTTTTAGAAGATTCTCCGCGTCTCTATTGGTTAACAGTGGTCTTTCTAGCATTTGACGTTTTTTTTATTATCTTCTGCATTGGGATGGCGTGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAGTAATAGCATTAGCTTATGCTATGAGAATTAGAGAAGGTGCATCAGAAGAAGATATCAGGTTACTTCCAAAGTATAGGTTTAGTCAGTCAAATTTATTGGAGATGGTTAATGACAACAAGAAGCAACTTGTTAAAGCAAGAGTAGATTCATGCACCGGAAGCCATAGGAGTGAACTTTCTCTCCATCCAGATGATTCAGAATGCTGTATCTGCCTATGTCCATATGTTGATGGAGCAGAACTGTATCGCCTTCCCTGTACCCACCATTTTCATTGTGAATGCATCGGCCGTTGGCTTCGGACCAAAGCAACCTGCCCGCTCTGCAAATACAATATCCTTAGAGGCGATACATTGGTTTGA 987 0.4954 MEQQQQRHVSTSGASNPVLRYPTVRATFTLPFARLIAADRRRLFLSDCADHRSDDEDDGDGGNCAYSRPVLVLDMVWNLAFVVVAAGVLLSTFRERPSTPLRLWLCGYAFECVVHMAFVYYDYRTSIRDSLSHTSYSILKKLEPINTLASSVWWVFGFYWIVVGGQALLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPVIALAYAMRIREGASEEDIRLLPKYRFSQSNLLEMVNDNKKQLVKARVDSCTGSHRSELSLHPDDSECCICLCPYVDGAELYRLPCTHHFHCECIGRWLRTKATCPLCKYNILRGDTLV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1351 328 SMART ring_2 277 317 IPR001841 -
Apr4g1351 328 Pfam Ring finger domain 276 318 IPR001841 -
Apr4g1351 328 SUPERFAMILY RING/U-box 270 322 - -
Apr4g1351 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 324 IPR013083 -
Apr4g1351 328 PANTHER TARGET OF ERK KINASE MPK-1 4 328 - -
Apr4g1351 328 PANTHER RING-FINGER UBIQUITIN LIGASE 4 328 - -
Apr4g1351 328 ProSiteProfiles Zinc finger RING-type profile. 277 318 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1351 Apr-Chr4 13083400 13087406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1351 10 325 C3H Transcription Factor Family AT1G68070 42.090 7.02e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1351 - - gmx:100806994 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1351 4 13083400 13087406 Apr4g1351 4 13083400 13087406 ECH