Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1340 ATGTCAGAAAGAATATCCATTGATGTTGAGGAGAGGAGGTTGAAGCGCAAAATGGAGGGGCCACCCACCTTGGCTGAAGAGGAGGATTCAAATCATGATCAGTTACTCGCTCTTGAACTTAACATGAATGAGTCTTCCTCCAACCCCACTTCCAAATCCTTGAAACTCAGTGAGGATTCAGGCTCTCCTCCAAAACATGTTGATCCCTCCAATGACCAAGTGAAAGAAAAGAATCAGCATCATTGCAAGTTTTGCAAGAGGAACTTCCCCAATTCACAAGCCTTAGGAGGACACCAAAATGCTCACAAGCGTGAGAGACTCATTCAAAACATGGAGAAAGAGATGGAAATGAACCCTTTTGGGTTTGGACCCAAAAATAATAACCTTCACTTTTATCCATATTCATTTTCATCCATGTCAAACCTTCCCTTCCAAGGGGCACCCTTTTATCAAGGTGCCCACTTGCACCCCATGGCACACGTGCCTAACATGTCTTGGCCTTATGCACCAACGGGCTATGGCAGCAAACAAGGCTATCCCTATGAAACACACTGTTTTGGGATGTCTAGTTCCTGGGGTGGAGGTTCTGCAACAACTCCAACGAGATTGAACCCTGAGAGTCGGAAGCTTTTTTATAATATTCCTTCACTTTTTGAAACTTCATCTAGTCCCAATGGTGGTTTTTTGGCTGACCTTAAGGGAAGTTCAAGTGTGTCAACTAAAGATTCATCTTCAGAGAAGCTTGACTTGTCTCTTAGACTCTGA 765 0.4392 MSERISIDVEERRLKRKMEGPPTLAEEEDSNHDQLLALELNMNESSSNPTSKSLKLSEDSGSPPKHVDPSNDQVKEKNQHHCKFCKRNFPNSQALGGHQNAHKRERLIQNMEKEMEMNPFGFGPKNNNLHFYPYSFSSMSNLPFQGAPFYQGAHLHPMAHVPNMSWPYAPTGYGSKQGYPYETHCFGMSSSWGGGSATTPTRLNPESRKLFYNIPSLFETSSSPNGGFLADLKGSSSVSTKDSSSEKLDLSLRL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1340 254 MobiDBLite consensus disorder prediction 233 254 - -
Apr4g1340 254 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 31 202 - -
Apr4g1340 254 Gene3D Classic Zinc Finger 59 119 - -
Apr4g1340 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Apr4g1340 254 MobiDBLite consensus disorder prediction 36 58 - -
Apr4g1340 254 MobiDBLite consensus disorder prediction 1 79 - -
Apr4g1340 254 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Apr4g1340 254 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Apr4g1340 254 PANTHER ZINC FINGER PROTEIN JAGGED 31 202 IPR045320 GO:0003700
Apr4g1340 254 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1340 Apr-Chr4 12921417 12922181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1340 71 178 C2H2 Transcription Factor Family AT3G58070 36.937 3.64e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1340 - - ccaj:109802675 183.341