Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1336 ATGTCAATGGCAGTGCCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAAAAGTGAAGACTCAGAATTCCCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGGTTCTTAGAAAAGGAGTCACTTGGCAAACTCCGTTCTCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGCATCACTTGAATCCAGTTATGATAAAGGGTCCCCATTTCGTTTCAAAATAGGCCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAGGGCGAGAAAGCAATCTTCAAAATTCCACCTAACTTGGCATACGGCGCAGTAGGGTCTCCACCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGTGTACCATCAGGGACTTGACTGGTGATGGAGGAATCATGAAAAAGATAATTCAGGAAGGAGAAGGATGGGCAACCCCTAGGGAAGCTGATGAGGTGTTAGTGAAATATGAAGCAAGACTAGAAAATGGGATGCTTGTTTCCATGTCTGAGCAAGGTGTGGAGTTTAATGTAAGTGATGGGTATCTATGTCCTGCCATTGGCATAGCAGTAAAGACAATGAGAAAGGGAGAGGTGGCAGAACTAGCTTTGAGATTCTGCTATGGACTCGGTGAAAATTCAAATAGGACCGCTGAGCTTGATGGTTGTCTCTCACCAGATTCTAAAATAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTAACTGATGTCGCAGGAGATAAGAAGATACTGAAAAAAATTAAGAAAGTTGGCGACGGGTTTGATCGTCCTAATGAAGGATCCCAAGTGAAAGTGATATATGTGTGTAAACGAGAAGATGGTACAATTATTGAGAGGAAAGGATCAGAGGAAGAACCCTTTGAGTTCACAACTCAGGAAGAACAGGTACCTGAGGGTCTAGAAAAAGCAATAATGACAATGAAAAAGGCAGAACAAGCTCTGGTTACTATCAATGCTGAATATTTGTGTGACCAAAATAATTCACTGGGAAAAATAGCCAATAATAAAGTCCTTTATTACGAAGTTGAATTGGTTGATTTCGTCAAGGAGAAGCCATTTTGGAAAATGGACACTCAAGAGAAAATAGAAGCTTGTGAAAGGAAGAAGCACGATGGAAATATGTTGTTTAAGGCTCAAAATTTCAGGCGCGCATCCAAGAAATATGTAAAGGCCATAAAATACATTGAGTTTGATCACTCATTCAGTGATGATCAGAAGCGTCATGCTAATACCTTACGATTATCCTGTTATTTGAACAACGCTGCTTGTAAATTAAAATTGGGGGAGTACACTGAAGCTTCTAGTCTATGCACAAAGGTCCTAGAATGTGACCCTTCAAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATACCTGAAAACATCAGAGTTGGAGAAAGCGGAAGCTGATATCAAAAGAGCACTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTTAAGCAAAAGGAATACGGTAGATATGAAGCTGACATCTTCAGCACAATGTTTTCAAGGATGGGCTAG 1620 0.4049 MSMAVPQLSHSLENELKSEDSEFPFKEIGNEGLTKRVLRKGVTWQTPFSGDEVEVHFRGQVENGASLESSYDKGSPFRFKIGQCEVIKGWDEGVATMKKGEKAIFKIPPNLAYGAVGSPPLIPPNATLIFDIEMLSWCTIRDLTGDGGIMKKIIQEGEGWATPREADEVLVKYEARLENGMLVSMSEQGVEFNVSDGYLCPAIGIAVKTMRKGEVAELALRFCYGLGENSNRTAELDGCLSPDSKITSIKLELVSWKIVTDVAGDKKILKKIKKVGDGFDRPNEGSQVKVIYVCKREDGTIIERKGSEEEPFEFTTQEEQVPEGLEKAIMTMKKAEQALVTINAEYLCDQNNSLGKIANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNMLFKAQNFRRASKKYVKAIKYIEFDHSFSDDQKRHANTLRLSCYLNNAACKLKLGEYTEASSLCTKVLECDPSNVKALYRRCQAYLKTSELEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYGRYEADIFSTMFSRMG* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1336 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Apr4g1336 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Apr4g1336 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Apr4g1336 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Apr4g1336 539 SUPERFAMILY FKBP-like 28 139 - -
Apr4g1336 539 SUPERFAMILY TPR-like 380 535 IPR011990 GO:0005515
Apr4g1336 539 Gene3D - 140 257 IPR046357 GO:0003755
Apr4g1336 539 Gene3D - 7 139 IPR046357 GO:0003755
Apr4g1336 539 Gene3D Tetratricopeptide repeat domain 376 533 IPR011990 GO:0005515
Apr4g1336 539 Gene3D - 258 375 IPR046357 GO:0003755
Apr4g1336 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Apr4g1336 539 Coils Coil 325 345 - -
Apr4g1336 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 257 IPR001179 GO:0003755
Apr4g1336 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Apr4g1336 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Apr4g1336 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 231 IPR001179 GO:0003755
Apr4g1336 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Apr4g1336 539 SUPERFAMILY FKBP-like 251 392 - -
Apr4g1336 539 SUPERFAMILY FKBP-like 143 232 - -
Apr4g1336 539 Pfam Tetratricopeptide repeat 473 506 IPR001440 GO:0005515
Apr4g1336 539 PANTHER PEPTIDYLPROLYL ISOMERASE 3 260 - -
Apr4g1336 539 PANTHER PEPTIDYLPROLYL ISOMERASE 255 361 - -
Apr4g1336 539 PANTHER PEPTIDYLPROLYL ISOMERASE 366 538 - -
Apr4g1336 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 255 361 - -
Apr4g1336 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 260 - -
Apr4g1336 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 366 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1336 Apr-Chr4 12874279 12877953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1336 27 538 Calmodulin-binding Proteins AT5G48570 53.372 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1336 - - gmx:100785412 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1336 4 12874279 12877953 Apr4g1336 4 12874279 12877953 ECH