Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1335 ATGGAAGGAGAAGGGTGTTGTGGGAGTTATTTTCAGAGGTGGAAGCCTTACATAGCTATGATTTCTCTGCAATTCGGCTTCGCCGGTATGAACATAATCACAAAAGTCTCACTCAACCGTGGCATGAGCCACTATGTGCTTGTGGTTTATAGGCATGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCACTTGTTCTCGAGAGGAAAGTGAGGCCTAAGATTACATTTGTTATGTTCATGCAAATGTTCGTGTTGGGTCTCCTTGGGCCCGTGATTGATCAAAACTTGTACTATGCGGGGTTGAAATTTACTTCCCCAACCTACTCATGTGCAATAAGCAACATGCTCCCTGCAATGACATTTGTGATGGCCGTTATTTGCAGGATGGAGAAGCTGAACGTGAGAAAAGTAAGATACCAAGCAAAGGTGATTGGAACAGTGGTAACTGTTGCTGGGGCCATGCTAATGACATTGTACAAAGGGCAAGTCATAAATTTCTTGGGGGCTAAGTACATGCATCATCCTAGAAACTATGCACCAGAAAACACCACTGATTCGGGTGAAAAGGATTGGTTTAAGGGTTCTATTCTGCTCATAATTGCTACCCTTTCTTGGGCTTCTTTCTTCATCCTTCAGGCAATGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTCGTGTGTGGATTGGGTACACTGCAATCAATTGCAGTTACCTTTGTGATGGAGCACAAGCCTTCTGTTTGGAGCATTGGTTGGGACATGAACCTTCTTGCTGCAGCCTATGCTGGTATAATATCATCAGGTATTACCTACTATGTTCAAGGGATTGTCATGCAAAAAAAAGGGCCAGTTTTTGTTACTGCTTTCAGCCCTTTGATGATGATCATAGTGGCCATCATGGGCGCTTTCATCCTTGCTGAAAAAATATATCTTGGAGGAGTGGTTGGAGCTATTCTGATCGTAATAGGACTTTACTCGGTTCTATGGGGCAAATATAAGGAAAACAAAGAGAAAGAAGCAGAGACAATCACTGAGGTAATGAAGTGCTGTTCAGAAAACGGAAGGATGGAAACTGTGATCGAAGATGCCGAAACAAATGACATTGAAATGCAAAAGAGTGAAGGTTGTGAAGAGTCAAGGGTAGCCATTGGTGTTCCAAAAGTATGA 1176 0.4328 MEGEGCCGSYFQRWKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPKITFVMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNMLPAMTFVMAVICRMEKLNVRKVRYQAKVIGTVVTVAGAMLMTLYKGQVINFLGAKYMHHPRNYAPENTTDSGEKDWFKGSILLIIATLSWASFFILQAMTLRKYPAQLSLTALVCGLGTLQSIAVTFVMEHKPSVWSIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVVGAILIVIGLYSVLWGKYKENKEKEAETITEVMKCCSENGRMETVIEDAETNDIEMQKSEGCEESRVAIGVPKV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1335 391 Pfam EamA-like transporter family 15 157 IPR000620 GO:0016020|GO:0016021
Apr4g1335 391 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Apr4g1335 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 336 - -
Apr4g1335 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Apr4g1335 391 PANTHER WAT1-RELATED PROTEIN 10 367 - -
Apr4g1335 391 PANTHER WAT1-RELATED PROTEIN 10 367 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1335 Apr-Chr4 12865386 12867783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1335 1 389 Nodulin-like Gene Family AT5G07050 63.797 4.52e-176 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1335 - - gmx:100811617 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1335 4 12865386 12867783 Apr4g1335 4 12865386 12867783 ECH