Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1321 ATGAGAGAAGAGGATTCAAAATGGTTTTCAAGATGGGAAGAGGAACTACCTTCACCAGAAGAACTCATGCCCCTATCCCAAACCCTAATAACCCCCGATCTAGCCATAGCCTTCGACATCAGAAACCCACACACAACCACAAACAACAACCCCACAACCCCACAACAACAGCAGCAGCAACAACCACCCTCAAACCCTTCCCCCACCAACCCCTCCCAACCCACCTCTACCGACTTCGCTGATTCCGGCGAACTCGGCTCCGGCACCGCCGGCGAAGAACCAGCACGAACCCTCAAAAGACCACGCCTCGTGTGGACCCCACAACTCCATAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATAAAAAACGCCGTTCCCAAAACCATAATGCAGCTCATGAGCGTCGACGGTTTAACCCGAGAAAACGTCGCTAGCCACTTGCAGAAATACCGCCTCTACCTCAAGCGCATGCAGGGAATTTCCGCTGCCGGAGCTGCCGGCGCCGGTGCCGGAGCTGCCGCCGCCGTCGCAGACCCTGCCACGGACCACTTATTCGCGAGCTCACCCGTGCCGCCACATTTCCTGCACCCGGCAGCACGGCCTAATTCGGATCATTTTTTGCCTTATGTGCCTGTGCCAGCCCTCCACCACCACCAGCAGCAGCAGCAGCAGCTGGCGGCGGCGCAGTATCACAGGCAGGTGGGGCATTTCGGATCACCGCCGAATGGGCACTTCGAGAATCCATTCATGTCTAGGCCCTCTCAGCAGCAGCAACAGCTTCATAGGATGGGGGCTCCTGTGCACAACCCTGTTTCTGGCTATGTGGAGGACATGGAATCTGCCAATGCTTCAGGTGGTAGAAAGGTCCTTACTTTATTTCCAACTGGGGATGATTGA 900 0.5678 MREEDSKWFSRWEEELPSPEELMPLSQTLITPDLAIAFDIRNPHTTTNNNPTTPQQQQQQQPPSNPSPTNPSQPTSTDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGAAGAGAGAAAAVADPATDHLFASSPVPPHFLHPAARPNSDHFLPYVPVPALHHHQQQQQQLAAAQYHRQVGHFGSPPNGHFENPFMSRPSQQQQQLHRMGAPVHNPVSGYVEDMESANASGGRKVLTLFPTGDD* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1321 299 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 299 - -
Apr4g1321 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 101 153 IPR006447 GO:0003677
Apr4g1321 299 MobiDBLite consensus disorder prediction 1 99 - -
Apr4g1321 299 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 299 IPR044841 GO:0003700|GO:0006355
Apr4g1321 299 Gene3D - 97 159 - -
Apr4g1321 299 MobiDBLite consensus disorder prediction 244 263 - -
Apr4g1321 299 Pfam Myb-like DNA-binding domain 104 152 IPR001005 -
Apr4g1321 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 156 IPR017930 -
Apr4g1321 299 MobiDBLite consensus disorder prediction 41 63 - -
Apr4g1321 299 MobiDBLite consensus disorder prediction 1 18 - -
Apr4g1321 299 MobiDBLite consensus disorder prediction 249 263 - -
Apr4g1321 299 SUPERFAMILY Homeodomain-like 97 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1321 Apr-Chr4 12545137 12549556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1321 1 299 G2-like Transcription Factor Family AT3G10760 57.849 5.64e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr4g1321 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1321 - - gmx:100815363 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1321 4 12545137 12549556 Apr4g1321 4 12545137 12549556 ECH