Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1320 ATGCCTTCGAATTCAAAGCAAAAGAAGCAAACGAAAGCGCACTCCATCTCAAGGTTACAACAATCACCATCCCAAGCTCAATTGCCAGAACAACTGACCTCTTTCTCCGAAGAAGCTTCTAGAAAGTTCCCTTCATTCATCTCCGAATCCCCGTTCATTGGCGAAATCACCCAAGTCGACCACTCTGCCCCTACTTCTAAGGGTTCTATAATTTGGCTTTCCGAACCTTCCATGCTTTCTTCCTCTCTTTCTCCAGGTTCCATTGTCTCCCTCTCTATCCCATTTTCAGGGAACAACACTACGCATTTCCCTCTTGCCTCGTTATCTAATCAATCTGTAAAATGCTACGGATTGCAAAATCAAAACACATCCCATCATCATGCAGGAAACTACTTTGCACTTGCAACATTGTTCCCTTCTAGTAAGGTTTTAAAGAATGGAGTGCGCCTGTCTTCAAATCTTTTTTATACCATGGGGTGTCCTTCTTTGGGCACAACTGTGTTTATTCATCAGTTACAGAAACAATACTTCTCTTCTCTTATAAATGAGAGCAATGAATTGTATTCTACCGAAAATAAGTGTTCTACTATATATAATTGCAAGGAATTGTATCTTCAGTTAGTTCCTTCTAAGAAAATTGATAATTTGCCGTCATTGGACTTGTCCAAGGTGAAACCCCTTGTCCAATCTGAGAATGATGTTATTGCATCTCCTACAACACCTTCTTATGGATCAAAGTTTTCTAATGCTACTGGGCTATCTTCTCCAGTATTTGAAGATTCAGTGTTAAGTGTGCCAAATCAGAATGTTCAATCAGTGGCTTCATTCGATGTTAGTGTGGCATTAAGGGATGAAAGTGCTAAAAAATTACTGCAGACATGTGCAACTTCCTGGTTATTTTCTCGTTCTTTATTGCTAGGGAATCTTGTCATTGTCCCAATGTTTTCAGAGTTGTGCTTTTTCCAAGTGATTGGAGCTGAGAAGTTTCCAGTTCCTGGATCTGATTATTATCCATCAAATCGGAGTAGCAATTTATGTCCTGAGGATTCTAATATAGCAGAGGATGTAAATCAGGCTTTCACAGTCAATTATGAAACTAAGGTATTTTTATCTCTGCCATCAGATGTGGCATCTGAAGAGCCAATTCAAAGGGATTTATCTTGTGTGAAACTAGAACATGAAGTTGCTAATGCCAGCATTCATGATAATATGCCTAAATTGGGTGGTCTGTCCAAAGAATCTGCTCTTTTAAAGGATATAATTTCTTCATCAGTGAAAGATACTTTATCAAGTTTTGGTTTAAGAACTACAAGAGGAGTCCTTCTTCGTGGTCCGCCTGGTACAGGAAAGACCTCTCTGGCTCAATTATGTGCTCGTGATGTTGGTGTCAATTTTTTCCCGATAAATGGACCTGAAATTGTTTCCCAATATTATGGGGAAAGTGAGCAAGCATTGCACAAAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCTGTGTTATTCATCGATGAATTAGATGCAATTGCCCCTGTGAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACCTTATTGAATCTGATGGATGGAATTAGTAGAACCAAAGGGTTACTTGTAATTGCTGCCACTAACAGGCCTGACCATATTGAGCCAGCTCTTAGACGGCCAGGAAGGTTTGACAAGGAAATTGAAATTGGTGTGCCATCTCCTAAACAACGTTCAGATATTTTGCTCACTCTTCTCAGTGAAATGGATCACTGTCTCCCTGAGTTACAAATTGAACACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATCTTGCTGCTCTTTGCAATGAGGCAGCCTTTATTTGTATGCAACGTTATGTTGATTTTAAGAAGACTTACAATTCTTTTTCTGATAACATAAAAGAGCAAGGGCCTCTGGTGAATGGTGCAACAAGTATAGGTGTTGAAACATCATCTGTTTCAGATATGTCAGTGGCCTCCAATCCTGTATTACCTTCATGCATGATGGGACCAACTTCTGAATCTATGGTAATTCCTGATAGTGGCGAAGAAGAACAGATTTTGAAAATAAGATTTGAGGATTTTCAGAATGCTAGGATGAAAATAAGACCCAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTGGGTGGCCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTAGAATGGCCACAGAAGCACCATGATGCATTCAGCCGTATTGGGACTCGCCCTCCAATGGGTGTATTGATGTTTGGGCCTCCAGGATGTAGTAAAACTCTAATGGCACGAGCAGTTGCTTCTAAAGCAGGGCTGAATTTTCTTGCAGTTAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTAACTCGTGGAAAGGAAAGTGATGGTGTTTCAGTGTCGGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGACTACATCAAAGGGTTAATGTCACCGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTGAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATTCATTTGCGTAAAATCCCATATGATTCTGATGTTAGCATTAAAGAACTAGCTCAACTGACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCTGTAATAACGATGATGCATTTAAAGATGGCAATCAAGCAGATCCAGCCATCAGAAGTTCAGACCTACCAAAAGCTGTTGGCAAAATTTCAAAGGGCTGTTCACTGCTGTGATATAGAGGATGAATTCAATCATATGTAA 3003 0.4109 MPSNSKQKKQTKAHSISRLQQSPSQAQLPEQLTSFSEEASRKFPSFISESPFIGEITQVDHSAPTSKGSIIWLSEPSMLSSSLSPGSIVSLSIPFSGNNTTHFPLASLSNQSVKCYGLQNQNTSHHHAGNYFALATLFPSSKVLKNGVRLSSNLFYTMGCPSLGTTVFIHQLQKQYFSSLINESNELYSTENKCSTIYNCKELYLQLVPSKKIDNLPSLDLSKVKPLVQSENDVIASPTTPSYGSKFSNATGLSSPVFEDSVLSVPNQNVQSVASFDVSVALRDESAKKLLQTCATSWLFSRSLLLGNLVIVPMFSELCFFQVIGAEKFPVPGSDYYPSNRSSNLCPEDSNIAEDVNQAFTVNYETKVFLSLPSDVASEEPIQRDLSCVKLEHEVANASIHDNMPKLGGLSKESALLKDIISSSVKDTLSSFGLRTTRGVLLRGPPGTGKTSLAQLCARDVGVNFFPINGPEIVSQYYGESEQALHKVFDSAIQAAPAVLFIDELDAIAPVRKDGGEELSQRLVATLLNLMDGISRTKGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILLTLLSEMDHCLPELQIEHLATVTHGFVGADLAALCNEAAFICMQRYVDFKKTYNSFSDNIKEQGPLVNGATSIGVETSSVSDMSVASNPVLPSCMMGPTSESMVIPDSGEEEQILKIRFEDFQNARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFSRIGTRPPMGVLMFGPPGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPYDSDVSIKELAQLTDGCTGADISLICREAAVAAIEESLDASVITMMHLKMAIKQIQPSEVQTYQKLLAKFQRAVHCCDIEDEFNHM* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1320 1000 Gene3D - 897 982 - -
Apr4g1320 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 628 IPR027417 -
Apr4g1320 1000 CDD AAA 434 569 - -
Apr4g1320 1000 CDD AAA 730 896 - -
Apr4g1320 1000 Gene3D - 388 569 IPR027417 -
Apr4g1320 1000 SMART AAA_5 436 572 IPR003593 -
Apr4g1320 1000 SMART AAA_5 760 898 IPR003593 -
Apr4g1320 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 976 IPR027417 -
Apr4g1320 1000 PANTHER - 69 992 - -
Apr4g1320 1000 Pfam AAA+ lid domain 918 963 IPR041569 -
Apr4g1320 1000 Pfam AAA+ lid domain 595 628 IPR041569 -
Apr4g1320 1000 Pfam ATPase family associated with various cellular activities (AAA) 440 569 IPR003959 GO:0005524|GO:0016887
Apr4g1320 1000 Pfam ATPase family associated with various cellular activities (AAA) 764 895 IPR003959 GO:0005524|GO:0016887
Apr4g1320 1000 ProSitePatterns AAA-protein family signature. 866 884 IPR003960 GO:0005524|GO:0016887
Apr4g1320 1000 PANTHER AAA-FAMILY ATPASE 69 992 - -
Apr4g1320 1000 Gene3D - 722 985 IPR027417 -
Apr4g1320 1000 Gene3D - 571 721 - -
Apr4g1320 1000 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1320 Apr-Chr4 12531130 12544537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1320 1 989 Calmodulin-binding Proteins AT3G56690 54.942 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1320 - - gmx:100788600 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1320 4 12531130 12544537 Apr4g1320 4 12531130 12544537 ECH