Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1315 ATGACCATGAAGTTGGGGTCACTAGATCAGTGGAGGAATTACTTTGGGTCAGCGAATTGCGATATATTTGACATAATTGACCATGCCATCATGGTGGCAGCTTCGGATTGCCCCAAGGAGTTTAGAGTGAGAAGGGATGCGATTGCGGAGAGGTTGTTCTCTTGTAGGTTGACTCGTTGTTTGGGGTGTGACCGTGTGGAGTTGGCTGTGTCTGGGGATTGCCAGAATGTAAATGGTGATGATGATGATGGTGATGACGATGGAGGTTGCAAGAGTGGTTTTGAAAGACATGGGGCTGAATTTGAAGCAGGGGCAAGCAAAGAAAGCAAGGCTAATAGTTGTGGAGATATGGGCGTGAACCGTGTTAGCAATTATAGCTTTGGGGAAGCTGAAGCATTGACTGATGAGATTGAAGAACAGTCTCAGTATTTTGAAGAGATTTTGAGGATCAGAGAAATTCTGCGTAACCGTGAAGATGCGTCTGAGTCTGCGTTATTTGATTCATTGAGGATGCTTCAGCTGATGGAACTCACCGTGGACATTCTAAAGGCAACTGAGATTGGCAAGGCTGTGAATCCCCTCCGAAAGCATGGATCAAAGGACATTCGTCAACTCGCACGAACTCTCATCGATGGCTGGAAGGAAATGGTAGATGAATGGGTCAAGGCTACAACTATTACAGTTGCAGGCTCAGAAGGCACGCCAGATTCAGTAAATCCATCTGTTGTTGATGATGAGGAAGAGGGACTACCATCGCCTCCTATGGATGAAGGGGCTTTCTTTGTAGCTCAAACTGGCTCAATAGAACTGTCACAGTTCTTTGATGGCATGGATGACGATGATGGAAATCCTCCACAAAGTGTGCAATTGAACAAGAACTATGACAACAGAAGAAAGCCAGCTATGGACAGTCACGTTAAAGAAAAGAGGAACTCGCATGCTTCCAATGAGATGACCGTGACTACCAAGGACAGTAGGAGTCAGCAAGCAAAGAAAAATGATGCTCCTGCGAAGCTAAATAAACCCGTAACTGCTGATTCTGGCCCCGGCAGACCACCAAAATCAAATATGCAGAGAAAATCTGTGGAGCCAAAGATGCAACAAAAAGTAGAGAACAGTTCAATCACAAAGAGGCCTCCCATTGTTCAGCAAGATAAATCCAAGTATTCAGATGATGATGCTGTCGAAGTGAAGCTAGAAGCCACTAAGAGGAGACTTCACGAGAGTTATCAACAAGCTGAAAATGCTAAGAAGCAGAGAACAATACAAGTTATGGAAATAAATGATCTCCCAAAGCAAGGGATGGTCCACAGAAATTCACATTTCAAGCCTGGATATCACAATAGACACTGGGCTAATTCATGGAGATAA 1371 0.4457 MTMKLGSLDQWRNYFGSANCDIFDIIDHAIMVAASDCPKEFRVRRDAIAERLFSCRLTRCLGCDRVELAVSGDCQNVNGDDDDGDDDGGCKSGFERHGAEFEAGASKESKANSCGDMGVNRVSNYSFGEAEALTDEIEEQSQYFEEILRIREILRNREDASESALFDSLRMLQLMELTVDILKATEIGKAVNPLRKHGSKDIRQLARTLIDGWKEMVDEWVKATTITVAGSEGTPDSVNPSVVDDEEEGLPSPPMDEGAFFVAQTGSIELSQFFDGMDDDDGNPPQSVQLNKNYDNRRKPAMDSHVKEKRNSHASNEMTVTTKDSRSQQAKKNDAPAKLNKPVTADSGPGRPPKSNMQRKSVEPKMQQKVENSSITKRPPIVQQDKSKYSDDDAVEVKLEATKRRLHESYQQAENAKKQRTIQVMEINDLPKQGMVHRNSHFKPGYHNRHWANSWR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1315 456 ProSiteProfiles TFIIS N-terminal domain profile. 145 220 IPR017923 -
Apr4g1315 456 Coils Coil 396 419 - -
Apr4g1315 456 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 141 224 IPR035441 -
Apr4g1315 456 MobiDBLite consensus disorder prediction 296 314 - -
Apr4g1315 456 MobiDBLite consensus disorder prediction 273 390 - -
Apr4g1315 456 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 6 454 IPR044805 -
Apr4g1315 456 MobiDBLite consensus disorder prediction 360 383 - -
Apr4g1315 456 Pfam TFIIS helical bundle-like domain 169 217 IPR017923 -
Apr4g1315 456 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 227 IPR035441 -
Apr4g1315 456 SMART TFS2_5 150 219 IPR003617 GO:0005634
Apr4g1315 456 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 6 454 - -
Apr4g1315 456 CDD TFIIS_I 145 218 - -
Apr4g1315 456 MobiDBLite consensus disorder prediction 230 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1315 Apr-Chr4 12414572 12418735 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Apr4g1315 Med26 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1315 - - gmx:100799367 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1315 4 12414572 12418735 Apr4g1315 4 12414572 12418735 ECH