Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1313 ATGGATTCAGAGATAGAAGAGAAATTCTTGATGGGCTTCATCAACGCCAACATAGTGGGCCTCAAACACTACCCCGTCGCGCTCGTCGGCGGCCGGCAAATGGTGGGCCTCATCCGCGAACCCCTCAATCAATACGATCCCAACGCCATCCAAGTCTTGAACATCCAACGCCTCCGCATCGGCTACATCGAACGCTCCGTCTCCGCCGTCATTTCCCCCCTCATCGACGCCGAACTCATCACCGTTGAAGCCATCCTCCCATCCATGCGCTCCCGCAACTTCCACATCCCAGCCCAAATCCACATCTTCGCTGAACCCCACAACTTTAATGCCGTCAGAGTTACCCTTTATGCGGCTGACCTCCAACTCATCAGCCCCTCCAACCCCGCCTTCACCCTCTCCGAGTCCGTCGCCGTTAAAGAAACGAAATCCAACCAAATGTACAAGTCCATCGATGCCATCTTTAAAGTCGTTCAAGACAACCTCGCCTCCAAGACCACCGTCGCCGAAACCTTGGACCCTCCCTCCCGCATCATCAAATCCCAGCTTCTCCCACACCAGAAGGAAGCCCTTGCGTGGCTCGTTCGCCGCGAAAATACCACCGAGTTGCCGCCGTTTTGGGAAGAAAGAGACGGCACCTTCGTCAACGTGTTAACCGATTACCAGACGTGTAAAAGACCAGAGCCCCTTCGCGGTGGCATTTTCGCTGATGAGATGGGTTTGGGAAAGACTCTAACTTTGCTTTCTTTGATTGCGTATGATAAAAGGAACGAAACGGGTATCCCCAAAAAGAAAAGAAGCAGCTACGTGGTGGGTGCTTCACAGCGCGAGCGTGATATTCATAGGTTTATTTCTGGTGGCGTGAAAACGAAGGCAACGTTAGTGGTGTGTCCTCCTTCTGTTATGTCAACGTGGATACAGCAGTTAGAGGAGCACACTTTTCGTGGTGCATTGAAGACTTATATGTATTATGGGGAAAGAAGGACCAAGGATGTCGAGGAGCTTAAGAAATATGATTTGGTGTTGAGTACTTACTCTACTTTGTCTATTGAACGTCAAAATGATGAAATGCCGGCGAAGAAAATGCAATGGAAGAGGATTGTGTTGGATGAAGCTCACCATATCAAGGATTTCACTACTAAACAGACTTCAGCAGTTTGCAGGATGAATGCTCAATACAGGTGGGCTGTTACTGGGACACCGATTCTAAATGGTTGCATTGATCTGTTTTCTCTAATGGTTTTTCTAAGGTTCGAACCATTTTCGGTCAGAAGTAGTTGGAGAGACTTTGTGCAACGCCCTATTAATAAGGGCAGGGACAATGGACTCTCGCGTTTGCAGATTTTGATGGGTGCAATTGCATTGCGAAGAACAAAAGAAAAGGGTTTGGCAGGGCTGCCACCTAAAACCGTAGATATTTGTTATGTTGAACTTTCTTCGGTAGATCGTGAACTGTATGATCAAATTAAAGAGCAAGCAAAGCCACTGTTGAATTATGACCCTCACAAAACTATAATGACCCATTATTCTGCTTTACTAGGTTGTCTACTACTGCTTCGCCAAATCTGTACTGATTCGGAATTGTTGCCTTTAAATCACAAGTCAGTGCTCCCTTCGTTTAATATTGAAGGTATATTCTTGCCCTTTGTATCAGATTCATGTATATAGTTACTTAATAGTTTGTTTACCTGGGTCCAATTCGAAGTTTCCAATAACCCTGAATTACTGCAAACATTACTTGGGTTGCTGCAAAATGGTGAAGATCTTGAGTGTCCAATTTGTATATCTCCTCCAACGGATATTGTAATCACAAGCTGTGCTCACATTTTCTGCCGACAATGTATTCTGAAAATTATGGAGCGAAGCAAAGCCCCTTGTCCTCTTTGTCGGCGACCCCTCTCAGAATCCAAGTTGTTCTCAGCCCCTCCTGAATCTTTCAATTCAGATAGCACTGAACTATGCTCATCAGGATCAAGGTTATCTCCCAAAGCATCAGCTCTGATAAAACTTCTCACTGAATCAAGAGAACAAAATCCTGCAGTAAAGTCAGTTGTATTTTCGCAATTTCGGAAGATGTTGTTGTTGCTGGAAAAGCCTCTGAATGCAGCAGGTTTCAAGACTATGCATCTTAATGGAACAATGAATGCGAAACACAGGGCTCGTGTCATTGAGCAGTTTCAAGTCCAAGGAGGAGATAGGCCAGTGGTTCTGCTGGCAAGCCTAAGGGCTTCAAGTGCAGGTATAAATCTCACAGCTGCCTCTAGAGTCTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAAGCAATGGATCGTCTCCACCGCATCGGTCAGAAAGAGCCTGTGAAAGTTTTTAGACTCATAGCTAAAAACAGCATTGAAGAGAAAATATTGGCATTGCAGGAGAAGAGGAAACAAATAACCGAGGAACCTCCTGTGGGTGGATCAAAGGAATATGGCATGAGCTACGAAGATCTACGTCTCCTATTAGTAGACTAG 2505 0.4587 MDSEIEEKFLMGFINANIVGLKHYPVALVGGRQMVGLIREPLNQYDPNAIQVLNIQRLRIGYIERSVSAVISPLIDAELITVEAILPSMRSRNFHIPAQIHIFAEPHNFNAVRVTLYAADLQLISPSNPAFTLSESVAVKETKSNQMYKSIDAIFKVVQDNLASKTTVAETLDPPSRIIKSQLLPHQKEALAWLVRRENTTELPPFWEERDGTFVNVLTDYQTCKRPEPLRGGIFADEMGLGKTLTLLSLIAYDKRNETGIPKKKRSSYVVGASQRERDIHRFISGGVKTKATLVVCPPSVMSTWIQQLEEHTFRGALKTYMYYGERRTKDVEELKKYDLVLSTYSTLSIERQNDEMPAKKMQWKRIVLDEAHHIKDFTTKQTSAVCRMNAQYRWAVTGTPILNGCIDLFSLMVFLRFEPFSVRSSWRDFVQRPINKGRDNGLSRLQILMGAIALRRTKEKGLAGLPPKTVDICYVELSSVDRELYDQIKEQAKPLLNYDPHKTIMTHYSALLGCLLLLRQICTDSELLPLNHKSVLPSFNIEGIFLPFVSDSCI*LLNSLFTWVQFEVSNNPELLQTLLGLLQNGEDLECPICISPPTDIVITSCAHIFCRQCILKIMERSKAPCPLCRRPLSESKLFSAPPESFNSDSTELCSSGSRLSPKASALIKLLTESREQNPAVKSVVFSQFRKMLLLLEKPLNAAGFKTMHLNGTMNAKHRARVIEQFQVQGGDRPVVLLASLRASSAGINLTAASRVYFMEPWWNHAVEEQAMDRLHRIGQKEPVKVFRLIAKNSIEEKILALQEKRKQITEEPPVGGSKEYGMSYEDLRLLLVD* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1313 833 CDD SF2_C_SNF 659 789 - -
Apr4g1313 833 SMART HIRAN_2 11 106 IPR014905 GO:0003676|GO:0008270|GO:0016818
Apr4g1313 833 SMART ultradead3 179 433 IPR014001 -
Apr4g1313 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 457 IPR027417 -
Apr4g1313 833 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 4 259 - -
Apr4g1313 833 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 282 811 - -
Apr4g1313 833 SMART ring_2 590 628 IPR001841 -
Apr4g1313 833 Gene3D - 152 480 IPR038718 -
Apr4g1313 833 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 282 811 - -
Apr4g1313 833 Pfam SNF2-related domain 186 528 IPR000330 GO:0005524|GO:0140658
Apr4g1313 833 Gene3D - 2 123 - -
Apr4g1313 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 224 419 IPR014001 -
Apr4g1313 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 828 IPR001650 -
Apr4g1313 833 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 4 259 - -
Apr4g1313 833 Coils Coil 791 811 - -
Apr4g1313 833 Pfam Zinc finger, C3HC4 type (RING finger) 587 633 - -
Apr4g1313 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 812 IPR027417 -
Apr4g1313 833 SMART helicmild6 693 778 IPR001650 -
Apr4g1313 833 Pfam HIRAN domain 12 91 IPR014905 GO:0003676|GO:0008270|GO:0016818
Apr4g1313 833 SUPERFAMILY RING/U-box 579 635 - -
Apr4g1313 833 ProSitePatterns Zinc finger RING-type signature. 605 614 IPR017907 -
Apr4g1313 833 Pfam Helicase conserved C-terminal domain 662 778 IPR001650 -
Apr4g1313 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 646 IPR013083 -
Apr4g1313 833 ProSiteProfiles Zinc finger RING-type profile. 590 629 IPR001841 -
Apr4g1313 833 Gene3D - 647 819 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1313 Apr-Chr4 12356340 12359490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1313 5 811 RAD5 or RAD16-like Gene Family AT5G05130 52.033 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr4g1313 SNF2_N 1.5e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1313 K15711 - gmx:100791783 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1313 4 12356340 12359490 Apr4g1313 4 12356340 12359490 ECH