Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1312 ATGGCATCCACCTCAATGTCAGCCTCTGGCTCATGGAGTGTTAAGGACAACAAAGCCTTTGAAAAGGCTCTAGCTGTTTATGACAAGGACACCCCTGACCGTTGGTACAATGTTGCTCATGCTGTTGGTGGGAAAACACCCGAGGAAGTGAAGAGGCACTATGAACTCCTTGTTCAGGATGTTAAGCATATTGAGTCAGGGCAAGTGCCATTCCCTAATTACAAGAAAACTGCAGGGTCTGAGGAGGAGAAAAGGATGAGGAATTTGAACCTCCAGTGA 279 0.4695 MASTSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGQVPFPNYKKTAGSEEEKRMRNLNLQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1312 92 CDD SANT 11 58 IPR001005 -
Apr4g1312 92 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 92 - -
Apr4g1312 92 MobiDBLite consensus disorder prediction 69 92 - -
Apr4g1312 92 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Apr4g1312 92 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Apr4g1312 92 Gene3D - 2 71 - -
Apr4g1312 92 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Apr4g1312 92 MobiDBLite consensus disorder prediction 77 92 - -
Apr4g1312 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 92 IPR044636 GO:0003700
Apr4g1312 92 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Apr4g1312 92 SMART sant 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1312 Apr-Chr4 12345614 12346414 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr4g1312 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1312 - - gmx:100818368 166.392