Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1308 ATGCTACCTAAGTCACTAACTATGATTGCAACAATAATTGTTGTTCTTGCACAAACACTTGTCGGGGTGAGTTCACTTCCTGAAGCTGATAAAATCAGCACTTTGCCGGGTCAGCCACAGGTCAATTTTCAGCAATATTCTGGTTACATTACAGTGGATGAGCAGCAACAAAGAGCTTTGTTTTACTACTTTGTTGAAGCTGAAGAAGACCCTGCTTCCAAGCCATTAGTCCTATGGTTGAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGTTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCGGGTGACAGCAATGTTCTTGTGAAAAATGATTATAGTTGGAACAAAGAGGCAAATATGTTATACTTGGAATCACCGGCCGGTGTTGGATTCTCTTACTCTGGCAATGAATCTTTCTATGCTTTAGTGGATGATGATATTACAGCGAGGGATAATCTTGTTTTCCTACAGCGTTGGTTCACTGAATTCCCTGAGTATTCAAATAACGACTTCTATATTACAGGGGAGAGTTATGCAGGCCACTATGTTCCACAGCTTGCACAACTTATTGTTCAAACCAAGACCAACTTCAGTCTCAAGGGGATAGCACTAGGAAACCCTCTTCTGGATTTTGATACTGATTTGAACTCTAAAGCTGAATTCCTTTGGTCTCATGGACTGATATCAGATTCAACTTACAACGCCTTCACTACAATCTGCAACTATTCCACATATGTGAGACAATACCAAAATGGGAATCTTAATAGTATTTGTGTAACAATAGCTAATCAAGTGCTTAATGAGATTAGCAAATATATCAATGTGTATGATGTCACTCTTGATGTCTGTTTGTCATCAGCAAATCAACAGGCTTATGTGTTGCATCAAGTGCAAGAGACACAGAATATAGATGTTTGTGTGGATGATAAAACGTTCATATACTTAAATAGAAAAGAAGTGCAAGAAGCTCTCCATGCTAAGCTTGTTGGAGTCTCCCATTGGACAGCTTGCAGCACAGTTCTTCATTATGACTATAAGAATGAACAGATACCAACAATTCCTCTTTTAGAGTCACTTGTTAAGTCTGGGATCAGGGTCCTAGTATACAGTGGAGATCAAGATTCAGTCATTCCATTAACCGGTTCGCGATCTCTGGTGGATGATTTGGCCAAGGAAATTGGACTGAATACAACAGTAGCCTACAGAGTCTGGTTTGAGGAAAAACAGGTAGCAGGATGGACCCAAGCATATGGGGACATCTTATCATATGCCACCATAAGAGGAGCAGCTCATGAAGCTCCCTTCACTCAGCCAGGGAGATCACTCGTGTTACTTAAAGCATTTTTGGAAGGAAGGCCATTGCCAAGTATTGAGTAA 1380 0.4087 MLPKSLTMIATIIVVLAQTLVGVSSLPEADKISTLPGQPQVNFQQYSGYITVDEQQQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSVGVGAFVEHGPFKPGDSNVLVKNDYSWNKEANMLYLESPAGVGFSYSGNESFYALVDDDITARDNLVFLQRWFTEFPEYSNNDFYITGESYAGHYVPQLAQLIVQTKTNFSLKGIALGNPLLDFDTDLNSKAEFLWSHGLISDSTYNAFTTICNYSTYVRQYQNGNLNSICVTIANQVLNEISKYINVYDVTLDVCLSSANQQAYVLHQVQETQNIDVCVDDKTFIYLNRKEVQEALHAKLVGVSHWTACSTVLHYDYKNEQIPTIPLLESLVKSGIRVLVYSGDQDSVIPLTGSRSLVDDLAKEIGLNTTVAYRVWFEEKQVAGWTQAYGDILSYATIRGAAHEAPFTQPGRSLVLLKAFLEGRPLPSIE* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1308 459 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Apr4g1308 459 PANTHER CARBOXYPEPTIDASE 6 457 - -
Apr4g1308 459 Pfam Serine carboxypeptidase 36 452 IPR001563 GO:0004185|GO:0006508
Apr4g1308 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Apr4g1308 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Apr4g1308 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Apr4g1308 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Apr4g1308 459 SUPERFAMILY alpha/beta-Hydrolases 34 456 IPR029058 -
Apr4g1308 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 457 IPR001563 GO:0004185|GO:0006508
Apr4g1308 459 Gene3D alpha/beta hydrolase 24 456 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1308 Apr-Chr4 12289593 12292348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1308 315 455 Calmodulin-binding Proteins AT2G22960 30.496 1.19e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1308 K16297 - gmx:100799900 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1308 4 12289593 12292348 Apr4g1308 4 12289593 12292348 ECH