Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1303 ATGCACCACACCTTCTCTACTAATTCCTCCAATAACTATTACCCCTTCCATGTGTCCGAAATTACCGAGCCACCCTCCCACCAAGATAGAGCCCTTGCTGCCATGAAGAACCACAAAGAAGCTGAAAAGAGAAGGAGGGAGAGAATCAATTCCCACCTCGACGAACTTCGCACTCTTCTGCCTTGTAATTCTAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTGGTTCAACGAGTGAAAGAGCTGAAGCAGCAAACCTCGGAAATCACTGAACTCGAAACGGTTCCATCGGAAACAGATGAGATCACCGTGCTATCCACCGGCGGCGAGTATTCCGGCGACGGAAGACTCATATTCAAAGCCTCTCTTTGCTGCGAGGACCGTTCCGACCTCATCCCTGATCTCATAGAAATCCTGAAATCTCTTCATCTCAAAACCCTGAAAGCGGAAATGGCAACGCTTGGAGGGAGAACGCGCAACGTTTTGGTGGTTGCTGCTGATAAAGAACACAGCATTGAATCCATTCACTTCCTTCAGAACTCGCTCAAGTCTTTGTTAGACCGATCCAATTCCAGTGACAGGTCAAAACGACGCCGTGGCTTAGACCGAAGGCTAATGCCTTAA 624 0.4888 MHHTFSTNSSNNYYPFHVSEITEPPSHQDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGEYSGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLLDRSNSSDRSKRRRGLDRRLMP* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1303 207 Gene3D - 28 94 IPR036638 GO:0046983
Apr4g1303 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 90 IPR036638 GO:0046983
Apr4g1303 207 Coils Coil 39 59 - -
Apr4g1303 207 MobiDBLite consensus disorder prediction 188 207 - -
Apr4g1303 207 MobiDBLite consensus disorder prediction 189 207 - -
Apr4g1303 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Apr4g1303 207 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 6 205 - -
Apr4g1303 207 PANTHER TRANSCRIPTION FACTOR BHLH30 6 205 IPR045847 GO:0003700|GO:0006355
Apr4g1303 207 Pfam Helix-loop-helix DNA-binding domain 37 82 IPR011598 GO:0046983
Apr4g1303 207 CDD bHLH_AtAIG1_like 28 104 - -
Apr4g1303 207 SMART finulus 39 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1303 Apr-Chr4 12194860 12196059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1303 13 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 71.038 8.38e-82 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1303 HLH 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1303 - K22484 pvu:PHAVU_001G121200g 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1303 4 12194860 12196059 Apr4g1303 4 12194860 12196059 ECH
Apr4g1303 4 12194860 12196059 Apr8g0890 8 9730621 9733091 PCT