Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1302 ATGCCTTACGTCGTGAGAGAGAATCTTCTGATCGGAAACATCGGCGACGCGGCGGAGATTCTCCAAAACGCCACCGTTCAGCACGTGACACACATCCTCTCCGTTCTCAGCTCCGCTTCCATATCCTTCTTCTCCGAATGGCGTCCCGGCCTCACCATCCCCGCCAAGGACATCGCCAAAGTTCACGTCGCCGACAACGCCGCCGCCAAGTCTGCCCTACCGCCGGAGAAGCTTCTTTACTCCGTCGAGTACGCCGGCCATGACTTGAAGCTAGTTCGCATGGCCGTACCTCTCAGGGACACCGAGAACGAGGACTTGTTGGATTACTTGGATGTTTGCATCGATTTCATCGATCGCAGTCGGAAGGAAGGTTCCGTTTTGGTCCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCGTATTTGATGAGGACCGAACGTCTGTCTAGAGAAGATGCCCTTGAGTCGTTAAGGCAGAGTTGTGAATTTGTTTGTCCCAACGATGGTTTTTTAGAGCAGTTGAAAATGTTCGAGGAGATGGGTTTCAAGGTTGATTACTCTAGCCCTATATACAAGCGTTTTCGTCTAAAAATACTAGGTGAGAATCATTTCTCAGGGTTGAGGATAGACAGTTCTAAACTTGGTGCGGATCCTGGCATGCCTGTTGAAATTTCTTCAGAGGTGGATGGAGCCGCTAAAGTAGAAAATAATCGTAGTCCTACCTATCGCTGTAAGAAGTGCCGGCGGCTTGTTGCATTGCAAGAACATGTTATAGATCATATTCCTGGTGAGGGTGAGACATCCTTTGAGTGGCACAAGCGGAGAAGTGGCAACCCTTTCAACAAATCCAATGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTACGATGGATGAAAGCTGTTGAGGAAGGCGCACTAGAGGGAAAGTTGTCCTGTGCTCATTGTGATGCCCGTTTAGGATACTTCAACTGGGCTGGCACACAATGCAGCTGCGGAAGCTGGATAACCCCAGCTTTTCAACTCCACAAAAGCCGGATAGACATAAGCCCTATGTAA 1068 0.4944 MPYVVRENLLIGNIGDAAEILQNATVQHVTHILSVLSSASISFFSEWRPGLTIPAKDIAKVHVADNAAAKSALPPEKLLYSVEYAGHDLKLVRMAVPLRDTENEDLLDYLDVCIDFIDRSRKEGSVLVHCFAGVSRSAAVITAYLMRTERLSREDALESLRQSCEFVCPNDGFLEQLKMFEEMGFKVDYSSPIYKRFRLKILGENHFSGLRIDSSKLGADPGMPVEISSEVDGAAKVENNRSPTYRCKKCRRLVALQEHVIDHIPGEGETSFEWHKRRSGNPFNKSNESECSSIFIEPLRWMKAVEEGALEGKLSCAHCDARLGYFNWAGTQCSCGSWITPAFQLHKSRIDISPM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1302 355 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 162 IPR000387 GO:0016311|GO:0016791
Apr4g1302 355 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 186 IPR020422 GO:0006470|GO:0008138
Apr4g1302 355 Gene3D Protein tyrosine phosphatase superfamily 4 203 IPR029021 -
Apr4g1302 355 CDD DSP_DUSP12 5 188 - -
Apr4g1302 355 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 351 - -
Apr4g1302 355 ProSitePatterns Tyrosine specific protein phosphatases active site. 128 138 IPR016130 GO:0016311|GO:0016791
Apr4g1302 355 PIRSF DUSP12 79 355 IPR016278 GO:0006470|GO:0008138
Apr4g1302 355 PIRSF DUSP12 4 49 IPR016278 GO:0006470|GO:0008138
Apr4g1302 355 Pfam Dual specificity phosphatase, catalytic domain 88 182 IPR000340 GO:0008138|GO:0016311
Apr4g1302 355 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 185 IPR029021 -
Apr4g1302 355 SMART dsp_5 1 183 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1302 Apr-Chr4 12137075 12140861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1302 44 182 Protein tyrosine phosphatase (PTP) family AT3G06110 33.333 7.88e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1302 K14819 - gmx:100804683 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1302 4 12137075 12140861 Apr4g1302 4 12137075 12140861 ECH