Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1291 ATGGGTAGCAGAAGTAGAGCGGTAAACGTTAACACTAAGGACACTAACAACGTTGCGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTCCTTCTAGTTCCATGGGAATAGAAGCAACTAATGTTCATCCTTCACGAATTTCCGAATTTGGAACCCTTGAACAATCTCTTGGATTTCGTGTTGAGGATACCATCAATCTTAGCAGAAATCCAGTGTTTAATCAGATGAAATCAAATAGCCAAGCTCTAGGAGCTGATATTCAATTTGGTGCTTTAAATAAGGTAATTTCTTATCTTCTTTATAAGATTATGTGCTTCCCAGAATCAACAAATCACAAATATAATGAAGTCCCATGTTCACACTTTCCTCTTACATGCAAGATACAGTCAATCGCAACCTCAGATATAAATCTCTCTGCTTCAATTACTGGATCTCAGGCATTGCCATTGCAAAAAGACTCACAACCAACTCTGGCTTTGACATCTGCTGGTCACCGTGAAAACTGGGGAGAGTCCAACATGGCTGATGCTAGCCCCAGAACTGATACTTCAACTGATGACACAGATGATAAAAATCAAATAGTTGAAAGGGGTGAATCTAGTGAAAGATCAAAAGATAAGTCAGATCAAAAGACATTAAGACGACTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGTCGATTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGTAGTAGGCTGAAACTCACCCAACTTGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCTCAGGAGATCAGGCCCATTCAATGAGTGGAAATGGTGCTATGGCTTTTGATGTAGAATACGCTCGATGGTTGGAAGAGCATAATAAACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTCCGTACCATTGTTGACAATTTCATGACACAATTTGAAGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTTTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTTCTCAAGCTTCTTGTCAGTCAGTTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCAGCAGTCATCCCAGCAGGCTGAAGACGCTCTTTCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCGCCTAGCTCTTCAGGCTCCTCAGGAAATGTGGCTAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTTCTTCACCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTAGGATATTAACCACCAGACAATCAGCTCGAGCTCTTCTTGCAATAAGCGATTATTTTTCCCGGCTGCAAGCCCTGAGTGCTCTATGGCTTGCCCGGCCAAGGGAGTGA 1494 0.4317 MGSRSRAVNVNTKDTNNVANGMPSYAPPLPSPSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFNQMKSNSQALGADIQFGALNKVISYLLYKIMCFPESTNHKYNEVPCSHFPLTCKIQSIATSDINLSASITGSQALPLQKDSQPTLALTSAGHRENWGESNMADASPRTDTSTDDTDDKNQIVERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEHNKQTNELRAAINSHAGDIELRTIVDNFMTQFEDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLHQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLQALSALWLARPRE* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1291 497 Pfam Seed dormancy control 295 370 IPR025422 GO:0006351|GO:0043565
Apr4g1291 497 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 62 497 - -
Apr4g1291 497 MobiDBLite consensus disorder prediction 1 23 - -
Apr4g1291 497 MobiDBLite consensus disorder prediction 183 214 - -
Apr4g1291 497 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 254 IPR004827 GO:0003700|GO:0006355
Apr4g1291 497 Coils Coil 231 258 - -
Apr4g1291 497 Pfam Basic region leucine zipper 208 254 IPR004827 GO:0003700|GO:0006355
Apr4g1291 497 SUPERFAMILY Leucine zipper domain 212 255 IPR046347 GO:0003700|GO:0006355
Apr4g1291 497 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g1291 497 CDD bZIP_HBP1b-like 212 264 - -
Apr4g1291 497 SMART brlzneu 208 271 IPR004827 GO:0003700|GO:0006355
Apr4g1291 497 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 215 230 IPR004827 GO:0003700|GO:0006355
Apr4g1291 497 ProSiteProfiles DOG1 domain profile. 277 494 IPR025422 GO:0006351|GO:0043565
Apr4g1291 497 PANTHER TRANSCRIPTION FACTOR TGA9 62 497 - -
Apr4g1291 497 MobiDBLite consensus disorder prediction 164 214 - -
Apr4g1291 497 MobiDBLite consensus disorder prediction 164 182 - -
Apr4g1291 497 Gene3D - 211 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1291 Apr-Chr4 12019283 12027909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1291 175 497 bZIP Transcription Factor Family AT3G12250 75.227 7.26e-174 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr4g1291 DOG1 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1291 K14431 - gmx:778136 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1291 4 12019283 12027909 Apr4g1291 4 12019283 12027909 ECH