Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1286 ATGTCCCTTGAAGAGTCTCTAGGAACTCTATCCCGGGACTACCTCAACCTTCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGACGTTTGGTCCACGCGCACCGCTGCATACTCGCGGCCAGAAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCCCCATCTGGGCTGGACCCGGCTGGGCCCCGTGTGAACTCGGGCGCGTCGAGGTCCGGGGTCATCCCTGTTAACTCGGTGGGCTACGAGGTGTTCTTGCTCATGTTGCAGTTCCTCTACAGTGGACAAGTCTGTATCGTTCCCCAGAAGCACGAGGCAAGGCCTAATTGCGGGGAGCGAGGCTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCACTCGACACCCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTCGCATCGCTCACTCAGAAACAACTAGCGAGCATGGTGGAGAAGGCTTCAATCGAGGATGTAATGAAAGTGCTGCTAGCGTCGAGAAAGCAAGACATGCAGCAACTGTGGACCACTTGTTCTCACCTCGTAGCAAAGTCAGGTCTTCCCCCTGAGGTTCTCGCCAAGCACCTCCCAATAGACATTGTCGCAAAGATCGAAGAGCTTCGTCTCAAATCCTCCCTAGCACGCCGCTCCTTAATGCCCCACCATCACTCACACCACCACCACCACTCCCACTACCACCACCACGACCTCGGCGCCGCCGCCGACCTCGAAGATCAAAAAATCCGTCGAATGAGAAGAGCCTTGGACTCCTCCGATGTCGAACTGGTAAAACTCATGCTAATGGGGGAAGGCCTCAACCTCGACGAAGCATTGGCCCTACCCTATGCGGTTGAGAATTGCAGCAGAGAAGTGGTGAAAGCGTTGCTAGAACTTGGTGCAGCTGATGTTAACTACCCCGCTGGACCCAACGGAAAAACCCCACTTCACATTGCGGCGGAGATGGTGTCGCCGGATATGGTGGCGGTGCTGCTTGACCATCACGCCGACCCCAATGTCCGAACAGTGGACGGTGTTACCCCTTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTCAAAGGTGCTGTCCCTGGACTAACCCACATCGAACCCAACAAGCTTAGGTTGTGCTTGGAGCTTGTTCAATCCGCTGCTCTAGTCATGTCACGTGAAGAAGGCAATGCCAACAACAACAATGTTCCTACTTCTACAACGCCCATATACCCTCCTCCCATGAACGAGGAGCACAATAGCAGTAGTAGCAGTGGCAACAACAACAACATTGGTAACCTCAACTTGGATTCCAGGTTGGTGTATCTCAACCTGGGTGCCACGGTGGGTTCGGCTCAAATGAGTTCCAGGTTGGACGGTGCTGATGATGACAGAGAAGCCTTGAACCCAACCATGTACCACCACTCTCATGACTTCTAG 1458 0.546 MSLEESLGTLSRDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRVNSGASRSGVIPVNSVGYEVFLLMLQFLYSGQVCIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLASLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLMPHHHSHHHHHSHYHHHDLGAAADLEDQKIRRMRRALDSSDVELVKLMLMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPAGPNGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNVPTSTTPIYPPPMNEEHNSSSSSGNNNNIGNLNLDSRLVYLNLGATVGSAQMSSRLDGADDDREALNPTMYHHSHDF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1286 485 Pfam Ankyrin repeats (3 copies) 266 348 IPR002110 GO:0005515
Apr4g1286 485 Pfam Domain of unknown function (DUF3420) 194 260 IPR024228 -
Apr4g1286 485 Pfam BTB/POZ domain 16 115 IPR000210 GO:0005515
Apr4g1286 485 ProSiteProfiles Ankyrin repeat region circular profile. 318 348 - -
Apr4g1286 485 ProSiteProfiles BTB domain profile. 25 106 IPR000210 GO:0005515
Apr4g1286 485 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 485 IPR044284 GO:0099402
Apr4g1286 485 SUPERFAMILY POZ domain 11 157 IPR011333 -
Apr4g1286 485 MobiDBLite consensus disorder prediction 460 485 - -
Apr4g1286 485 Gene3D - 250 366 IPR036770 -
Apr4g1286 485 SUPERFAMILY Ankyrin repeat 277 361 IPR036770 -
Apr4g1286 485 MobiDBLite consensus disorder prediction 464 485 - -
Apr4g1286 485 Gene3D Potassium Channel Kv1.1; Chain A 3 192 IPR011333 -
Apr4g1286 485 CDD BTB_POZ_NPR_plant 8 159 - -
Apr4g1286 485 PANTHER REGULATORY PROTEIN NPR5 1 485 - -
Apr4g1286 485 SMART ANK_2a 318 347 IPR002110 GO:0005515
Apr4g1286 485 SMART ANK_2a 283 313 IPR002110 GO:0005515
Apr4g1286 485 SMART BTB_4 25 159 IPR000210 GO:0005515
Apr4g1286 485 MobiDBLite consensus disorder prediction 402 437 - -
Apr4g1286 485 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1286 Apr-Chr4 11871908 11875756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1286 318 356 Ion Channels AT2G26650 53.846 4.60e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr4g1286 BTB 7.2e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1286 K14508 - gmx:100816086 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1286 4 11871908 11875756 Apr8g0885 8 9605321 9608579 PCT