Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1270 ATGGGATGGCTTTTAGAGGAGGAACCCTTAAGCCATAATCAGAATTATTTCTATAAAAATAGTGTGTCCTCAGAGGACTCATTGCCCCATCAATTCTCTTCACCACAGCCACAGGTTGAGGTTGAAAGGTCTACTTCACCATCCCCAGACTCTACCATGGTCAAGAAGCTTAACCACAACGCTAGTGAACGTGATCGCCGCAAGAAGATCAATGGTTTGATTTCTTCACTTCGTTCACTTCTTCCAGTGGCAGATCAAACGAAGAAAATGAGCATTCCTGTAACAATTTCGCGAGTCTTAAAATACATACCCGAGTTACAAAAGGAGGTGCAAGAACTAACGAAGAAAAAAGAGGAGCTTCTATGGAGAATTTCTCAGCAAGGAGATGCATTTATCAAAGAATTTCAAAGGGAAATTACCCACTACGATTCTGGTTTTGTTGTTTCAACAAGTAGACTAAACGATAGTGAGGCCGCCTTTAACATTTCTTCTCATGAGGTTCACAATAAGGCTCCACTCTCTGAAATTTTGCACTTTTTAGAAAATAATGGGCTCTTTCTGCTAAACGCTTCTTCTACTGAAACCTTTGGAGGGAGGGTCTTCTACAATTTGCATTTCCATGTGGAAAAAACTTATAGATTAGAGTCCGAGATTCTAATTGAGAAGCTTTTGTCAATATATGAGAAGAGGCAAAGGGTTTTCTAA 705 0.3986 MGWLLEEEPLSHNQNYFYKNSVSSEDSLPHQFSSPQPQVEVERSTSPSPDSTMVKKLNHNASERDRRKKINGLISSLRSLLPVADQTKKMSIPVTISRVLKYIPELQKEVQELTKKKEELLWRISQQGDAFIKEFQREITHYDSGFVVSTSRLNDSEAAFNISSHEVHNKAPLSEILHFLENNGLFLLNASSTETFGGRVFYNLHFHVEKTYRLESEILIEKLLSIYEKRQRVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1270 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 106 IPR011598 GO:0046983
Apr4g1270 234 CDD bHLH_AtORG2_like 55 127 - -
Apr4g1270 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 125 IPR036638 GO:0046983
Apr4g1270 234 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 229 - -
Apr4g1270 234 MobiDBLite consensus disorder prediction 24 54 - -
Apr4g1270 234 Pfam Helix-loop-helix DNA-binding domain 55 107 IPR011598 GO:0046983
Apr4g1270 234 SMART finulus 60 112 IPR011598 GO:0046983
Apr4g1270 234 Coils Coil 103 123 - -
Apr4g1270 234 Gene3D - 48 139 IPR036638 GO:0046983
Apr4g1270 234 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 229 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1270 Apr-Chr4 11601733 11603458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1270 52 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.663 3.04e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1270 HLH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1270 - - gmx:100803424 306.219