Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1255 ATGGCAGCAGCGAGCAAAGCCCCAGCGTGGAAATTCCACGTGTTCCTCAGTTTCAGGGGAGAAGACACACGCAACAAATTCACCGATCACCTATACGCTGCATTTAATGGCAGTGGCCTCGCCGTTTTCAAAGACGACAGAGAACTCCAGAGAGGACAAGTAATCGCGAGCGAGCTCCCCAAAGCGATTGAAGAATCGCTCTCTTCGGTCGTGGTTCTTTCTCCGCACTACGCTTCTTCTCGGTGGTGCTTGAACGAGCTTCTCAAGATACTTGAATCGCGAACGCAATTCAGTCGATTCGTTTTTCCGATCTTCTACGACGTGGATCCCTCCGATGTGAGGCACCAGCGAGGATCTTTTGCGCAAGCTTTCGCGAAGCATGGGGAAAGGTTTGGATGTGAGAGTGAGAAGGTTCGAAGGTGGAGACAAGCCTTGACGGACGTTGCAGATTTGTCTGGCTGGACCTCTAGGAATTGGCCAGAAACGGAACTCATTGAAGAAATTGTTGCAGAGGTCTGGGAAAATTTACAACCTCATTTGCCATCCTATTATGATGAACTGGTTGGAATTGATTCAAGGATAAACAACCTTTATTCCCTTTTAAGGACAGGGTCAGAGGAAGTTCGCTTTTTGGGGATATGGGGTATGGGTGGCATAGGAAAGACAACTCTAGCCAAATTTGTCTATAAGAAAATCCATAAACAATTTGATATTAGTTGCTTTCTTGACAATGTTAGAGAGGTTTCTAGTGAAAGAGATGGTCTGCTTTGCTTACAAAGAAAATTGCTTTCTCATCTGAAAATTAGAAGCATGAGAATTGAAAGTTTGGACCAAGGGAAGGAAACAATACGGAATCTCTTATTCAATAAAAAAGTTCTGCTTGTGCTTGATGATTTAAGTTCTGATATCCAACTAGAGACTTTAGCTGGAAAGCAAGAATGGTTTGGACCAGGGAGCAGAGTAATAATAACGACTAGAGACAAGCATCTACTAGCATCACTAGACGTTTGTGAAAATTATGATGTTCAAATTTTAAATAGTGAAGAATCCCTTCAACTTTTTTGTCAGAAGGCGTTCAAAGGAGAAAAACCTGAAGAAGCTTACGTAGAATGGTCAAAATGTGTGGTTCAATGTGCAGGAGGCATTCCTTTGGCTCTCAAAGTGCTGGGTTCATTCCTTTGTGGAAGAAGCGCATCCATATGGGAGGATGCTTTGAAAATGTTAAGGCAGGATCTACAAAATGATGTTTACAAGACTCTAAGAATAAGTTTTGATGGATTACGAGATATGGAAAAGGCTATATTTCTAGATATTGCTTGTTTTTTCAAGGGAAGCACCAAAGATCACGTGACACAAATATTGAAAAATTGTGGTCTCAATCCATTGATTGCTATAGACGTTCTAATTGAAAAATCATTGGTAACTTATGATGGATGGCATTTGGGGATGCACGATTTGCTTCAAGAAATGGGTAGGAATATCGTTCTCCAAGAATCTCCTAATGATGCTGGCAAGCGGAGTAGGTTATGGACTCTCAAGGACATTGATCAAGTATTCCGAAATAATAAAGGAACTGAATCCATTCAAGCTATAGTTCTAAATCTGCCAGAGCCTTATGAAGCATGTTGGAACCCAGGAGCGTTCTCAAAGATGAGTAATCTTAGACTTCTCATGATATTAAATAAATTGCACCTGCCACTTGGTCTCAAGTCTCTGCCCAGTGGATTAAAAGTTCTTGTATGGAAGGAATATCCTCTCGAATCGTTGCCAGTTGGAGCTCAACTAGATGAACTTGTTGACCTTGATATGTGTCATAGCAAAATAAAACACCTTTGGAGAGGAACAAAGTTTCTGGGAAATTTGAAGACCATCAATTTGAGAAATTCCAAAGATCTGCATATAACTCCAGATTTCACTGGAATCCCAAATCTTGAAAAATTGGATCTTGAAGGCTGCATAAACCTAGTTGAGGTGCATGCATCTCTTGGACTACTTAAAAAGATTTCATATGTGACATTAGAAGATTGCAAAAATCTCAAAATCCTTCCAAGAAAATTGGTAATGGATTCTTTAAAACGTCTAATTCTTTCAGGCTGCTCAGCAGTTAGAAAACTTCCTGAGTTCGGGGAAAATATGAAAAATTTGTCCATGCTTGCTCTAGAGGAGACTTCCATAGCTGAACTGCCTTCATCTGTTGGTCATTTGACAGGTTTAAAGAACTTGCTTTTAGCAGGTTGCAAAAGTATTGTTTGCCTTCCAAAAACCATTTCTAATTTGAAATCTCTCATAAGGCTCAATATCTCTGGTTGCTCAAAATTTTCTAAGCTGCCTGATAATTTGAATGAAAATGAGGCATTGGAGTGTCTTAATGTGAGTGAGACTGCTATAAGAGAAGTGCCTCCATCCATTGTTTTCTTAAAAAACCTTAGACTACTTTTATTTCGTGGATGCAAAGGACTATCATCAAACTCTCATAGCTCACTTTTCTCTTTGAAGAAGATTTTTGGTCCGATTCCCAAGAGATTAGTTTTGCCTTCTTTTTCTGGTTTGTACTCACTGAAGAAACTCGACTTAAGCTATTGCAATCTCCATGATGGATCAATTCCTGATGATCTTGGCTGCTTATCATCACTGGTAACATTAGATCTAAGTGGGAACAATTTTGTACAACTTCCTGCCGGCTGCATCTCTAAACTTTTGAAGCTAGAGAAACTTTTATTGAAGTTCTGCCCAAACCTGCAATCATTTCCTAAGCTGCCACCAAATGTGCATTATGTAAATGCAAGTGATTGTGGTTCAATGAAACCTTTATCAGATCCACGGCAGATATGGGGTCACTTGGCATCATTTGCCTTCGATAAGTTGCAAGATGCCAAACAGCTTAAAACTTTATTAGTAAGTCCGGGAAACGAAATTCCATCATTCTTTTTCTATCAAAAGTATTTCAACCAAGTTCAAGACATAGAATACTTAAAAGATAACTACATTTGGGCTGATTCTACTGTGTCAATATCAATGGACTTGGCTGAACTTCGTCATCGTTATTATAGATGTGAATGGTGGGGAATTTTGGTTTGCCTTGTTGTGGAAGATGTGGTGTCTTCACCTTCCCAGGACTATCGCATTGGTTGGATTTCAAAAGTTCCTACCATCAACAACTTTTTGCATCAGCTATGTCACAAGTTGGAACATGGATTCATTTCAGGAATCCCGAATCATAAATATCCTCACCTGTTGATTTTATATCTTCCGTTCTGTCCATCTCGCTGGTTTTATGTTAAAGACAAGTTTCAATTAATATTTTTCAGTTCTAGTCTTAAGAGTAAGCTGGTGATAAAGAAATGTGGATGGAGAATATTATGTAAGGAAAATGCTGAAAGCTGGCGCAAAAAACTGTCTGAATGCAACACTGCTTCAGCCAACCTATGTATTCCACGTGGGGTTGGCTTATCTCCTCTTTTTGCTTCTTGGAGTTGGATATGCCATCTAAAGGTTCCCCAACGTTGCAAGACTTTCCTCTTGTCAGTCCTGTGCGATCGCTTGCCTGGTAATGCAAGGTGCAGGTTCTGCATCTTGGAAGGTACTATCATCCATGTTTTACGAGATTGTAGACGAGCTGTTGCAATCTGGGTTCAAATGGTTCCCGCTGACGTGCGTGATGAATTTTTTTCAATGTCGCTTCATGACTGGATGCATAGATTCCTTCAGAAACCTTGGTTGCCAAATAATTACCGGGACTATGATGCTGACTGTTTGAGGTTTACCATCACGACTTGGCTGCTTTGGAAGGATAGAAATAGTTCCATCATCGAGGGAAATTCTCCAACAGATAATAATGGGTTGTATTCTCTAATTCAGTCGCTAGTAAAAGAATATGCAATGTTTTTGCATCTAAATGGGGAAGAGGGTACTTCTGCTGTGAGTTCTCTCTCCGAGAACTCACGTCTAAAGCATTTTATTAAGTTGAACGTGGGTAGCTGCTTCCTGGGAAATCCTAGCATAGCGGGTTATGGAGGTCTCTTTCGTGATGTGGAAGGGAATTGGCTCAGTGGGTTCTATGGATCTCTGGGCGTTACAACAACTGTGAAAGCGGAGCTTCATACCATTTGTCAGGGTTTGATCACAGCTTGGGATTTGGGTTACAGAAATGTACTGGTTGAAACCGATTCATCTGAAGCTATACATCTGATTGAGGAGGCTAATATTGAGGATCATGCCTATGGTGACTTGCTAGCTGGCATACACTCCCTCAAGCAAAGAAACTGGTCCTTGAATTTGATCCATTCTCTCAGGGAAGATAATGCATGCGCAGACATTTTAGCAAAACTTGGAGCTGAGCAACATAAGGTCTATTGCTTCCTGGCTGATCCACCTGAGCAGCTTCGGCTGGCATTGATGGCTGATGCATTAAATGTTCAACTTCCTTGCCTGTAG 4434 0.4069 MAAASKAPAWKFHVFLSFRGEDTRNKFTDHLYAAFNGSGLAVFKDDRELQRGQVIASELPKAIEESLSSVVVLSPHYASSRWCLNELLKILESRTQFSRFVFPIFYDVDPSDVRHQRGSFAQAFAKHGERFGCESEKVRRWRQALTDVADLSGWTSRNWPETELIEEIVAEVWENLQPHLPSYYDELVGIDSRINNLYSLLRTGSEEVRFLGIWGMGGIGKTTLAKFVYKKIHKQFDISCFLDNVREVSSERDGLLCLQRKLLSHLKIRSMRIESLDQGKETIRNLLFNKKVLLVLDDLSSDIQLETLAGKQEWFGPGSRVIITTRDKHLLASLDVCENYDVQILNSEESLQLFCQKAFKGEKPEEAYVEWSKCVVQCAGGIPLALKVLGSFLCGRSASIWEDALKMLRQDLQNDVYKTLRISFDGLRDMEKAIFLDIACFFKGSTKDHVTQILKNCGLNPLIAIDVLIEKSLVTYDGWHLGMHDLLQEMGRNIVLQESPNDAGKRSRLWTLKDIDQVFRNNKGTESIQAIVLNLPEPYEACWNPGAFSKMSNLRLLMILNKLHLPLGLKSLPSGLKVLVWKEYPLESLPVGAQLDELVDLDMCHSKIKHLWRGTKFLGNLKTINLRNSKDLHITPDFTGIPNLEKLDLEGCINLVEVHASLGLLKKISYVTLEDCKNLKILPRKLVMDSLKRLILSGCSAVRKLPEFGENMKNLSMLALEETSIAELPSSVGHLTGLKNLLLAGCKSIVCLPKTISNLKSLIRLNISGCSKFSKLPDNLNENEALECLNVSETAIREVPPSIVFLKNLRLLLFRGCKGLSSNSHSSLFSLKKIFGPIPKRLVLPSFSGLYSLKKLDLSYCNLHDGSIPDDLGCLSSLVTLDLSGNNFVQLPAGCISKLLKLEKLLLKFCPNLQSFPKLPPNVHYVNASDCGSMKPLSDPRQIWGHLASFAFDKLQDAKQLKTLLVSPGNEIPSFFFYQKYFNQVQDIEYLKDNYIWADSTVSISMDLAELRHRYYRCEWWGILVCLVVEDVVSSPSQDYRIGWISKVPTINNFLHQLCHKLEHGFISGIPNHKYPHLLILYLPFCPSRWFYVKDKFQLIFFSSSLKSKLVIKKCGWRILCKENAESWRKKLSECNTASANLCIPRGVGLSPLFASWSWICHLKVPQRCKTFLLSVLCDRLPGNARCRFCILEGTIIHVLRDCRRAVAIWVQMVPADVRDEFFSMSLHDWMHRFLQKPWLPNNYRDYDADCLRFTITTWLLWKDRNSSIIEGNSPTDNNGLYSLIQSLVKEYAMFLHLNGEEGTSAVSSLSENSRLKHFIKLNVGSCFLGNPSIAGYGGLFRDVEGNWLSGFYGSLGVTTTVKAELHTICQGLITAWDLGYRNVLVETDSSEAIHLIEEANIEDHAYGDLLAGIHSLKQRNWSLNLIHSLREDNACADILAKLGAEQHKVYCFLADPPEQLRLALMADALNVQLPCL* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1255 1477 Gene3D - 1320 1447 IPR036397 GO:0003676
Apr4g1255 1477 Pfam TIR domain 11 188 IPR000157 GO:0007165
Apr4g1255 1477 CDD RNase_H_like 1322 1442 IPR044730 -
Apr4g1255 1477 Pfam Reverse transcriptase-like 1326 1442 IPR002156 GO:0003676|GO:0004523
Apr4g1255 1477 Gene3D - 178 340 IPR027417 -
Apr4g1255 1477 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 8 732 - -
Apr4g1255 1477 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 724 984 - -
Apr4g1255 1477 Gene3D - 8 177 IPR035897 -
Apr4g1255 1477 Gene3D Ribonuclease Inhibitor 705 974 IPR032675 -
Apr4g1255 1477 Gene3D Ribonuclease Inhibitor 531 704 IPR032675 -
Apr4g1255 1477 SMART LRR_typ_2 712 735 IPR003591 -
Apr4g1255 1477 SMART LRR_typ_2 850 874 IPR003591 -
Apr4g1255 1477 SMART LRR_typ_2 875 898 IPR003591 -
Apr4g1255 1477 SMART till_3 11 151 IPR000157 GO:0007165
Apr4g1255 1477 PRINTS Disease resistance protein signature 210 225 - -
Apr4g1255 1477 PRINTS Disease resistance protein signature 286 300 - -
Apr4g1255 1477 PRINTS Disease resistance protein signature 379 393 - -
Apr4g1255 1477 PRINTS Disease resistance protein signature 873 889 - -
Apr4g1255 1477 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 732 IPR044974 GO:0006952
Apr4g1255 1477 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 724 984 IPR044974 GO:0006952
Apr4g1255 1477 Gene3D - 344 428 IPR042197 -
Apr4g1255 1477 SUPERFAMILY L domain-like 483 832 - -
Apr4g1255 1477 ProSiteProfiles RNase H type-1 domain profile. 1315 1446 IPR002156 GO:0003676|GO:0004523
Apr4g1255 1477 SUPERFAMILY L domain-like 778 934 - -
Apr4g1255 1477 Pfam NB-ARC domain 200 418 IPR002182 GO:0043531
Apr4g1255 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 438 IPR027417 -
Apr4g1255 1477 ProSiteProfiles TIR domain profile. 10 180 IPR000157 GO:0007165
Apr4g1255 1477 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 154 IPR035897 -
Apr4g1255 1477 SUPERFAMILY Ribonuclease H-like 1319 1448 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1255 Apr-Chr4 11426522 11433077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1255 12 814 WRKY Transcription Factor Family AT4G12020 33.050 3.14e-103 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1255 - - var:108321227 2305.02