Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1245 ATGGATCACAGGTCCAAACCCAAGGACTCACTCTCTTACTCCACCCTCTTCAATCTTGAGTCTTTGATGAGCTTTCAGCTTCCAGAACAAGATGATGACTTTGATTACTATGGGAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGGTGGGGTGATTGCAAATCACAGTAATGGGAATGTGCGTGGAAGGGAAGTGAGTTTGCTGAAGAAGAGGAGGTGGTCTCAAAACAGTGACAACGAGGAGAAGAGTAGTTTTTACGGGACACATATGACGGAAGAGAGATATCGGTCGATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAGGGATACCTCGACCAGTCCTGCCCAAAATCAGGCTGCTGTTCCACTTGTGAAAGGTAATGCGGGATTGAAAGCTCGCAAGTCCGGGAACGAGCGTAGGGGAGGATTACATGCTGCGGAAACTACATCGGAATGGATGAATGATTCCAATTCTCAGAGACCAGGAAACTACCGTGATGCAGATTCAATGCAGCAACATGGCACTGATAGGATTATGTATGAACCTGCATCTGTGGATATTGGGGATGGTATCACTTACAAGATTCCTCCAATCTATGATAAGTTGGCTTCAGCTCTGAACCTCCCAAGCTTCTCAGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGAAATGATGGCTGCTGATAAAAGGTTTGGGAACAGAAACCGAGGAGGCATGGGGGAAGCAATACCTCAGTATGAATCACTTCAGGCACGGCTGAAGATCATGTCAGCTTCTAATTCAGCTCATAAATTCGGTCTGAAAGTATCTGATATTGGTTTGAATTCCTCCATTCCGGAGGGGGCAGCAGGAAGCATAAAGCGATCTATTCTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATGTGTAAAGATTTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTTACTACTTTTCATAGAAAGCAACTGATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGAACTGCTGGTATGCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGACAAGGAGATGGCAGAAGTGAGAAAAAGGGAGGAAAAAGAAGCTGCTGAAACTTTGAGGCGTGAACAGGAAGTTAGAGAAGCAAAGAGGCAACAGCAAAGGCTTAATTTTCTTATACAACAGACTGAGCTGTACAGTCACTTTATGCAGAACAAGGCAAACTTAATATCTTCAGAAGCTTTACCCAAGGTAGATGAAGATACATATGATCAAGATGCACTGATTGACTCTTCAGATGCTGGGCCTAATGAGGAGGAAGATCCTGAAGAGGTTGAATTGAAAAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTATCTAAGCAGAGAAAGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCACTTCCACCAGAAGTTGCTGGAGCTAGTAACATTGATTTACAAACCCCCTCAACCATGCCAGTGGCGTCCACTGTTCGGACACCTGAATTATTTAAAGGTTGTCTTAAAGAATATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCGGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCTTTTCTTGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATAAACCCAAAGGATCTATATCTCAGCTCAATTTGTAATTTATCTTTTTGGTCTTTAATTTTCATTCATTTTATTTCTATTTTAACCATACCTTGCTTATTTACCAGGGAGGCTAAATTTCATATTCTCATTACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAATATATGGTTTTAGATGAAGCTCAGGCAATTAAAAGTTCAACCAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGTCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCTGAATTGTGGGCTCTTCTGCATTTCATCATGCCAACTTTATTTGACAGCCACGAACAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAATGAGCACCAGCTGAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGTCGTGTTAAAAAGGATGTAATTTCTGAGCTGACTACAAAAACTGAGGTTACTGTGCATTGTAAGTTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTAAACTTAATGAACATTGTTATTCAATTAAGGAAGGTTTGCAATCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACTTACCTTTACTTTGGAGAGATTCCGAATTCCCTTTCACCTCCTCCATTTGGGGAGTTGGAGGATGTGTATTATTCTGGTGGTCACAACCCCATATCATATGAGATTCCAAAACTTGTCTATCAAGAAATTATGCAAAGTTCTGACACTCTTAGTTCAGCTGTTGGTCATGGTGTCTCCAGAGAATCCTTTCAGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATCGATCTGTCTTCTCAGAAGATAAGTGCATTAAAAGTGGAAACTTTGGTTTTACCCATTTAATAGATTTGTCTCCACAAGAGGTGACATTTCTGGCTACCAGTTCTTTAATGGAGCAACTATTATTTTCTATGATGAGATGGGAACAAAAATTCATTGATGAAGCTGTGGACTTCCTAATGGAGACCATAGATGATGATCCAGAATGCAGTTACCTTGAGAAAGAAAAAGTGAGAACCGTTACACGAATGTTATTGGTGCCGTCAAGATCTGAGACCCAGTTTCTTCAAAAAAGATTGCCAACTGGGCCCAGCCAAGCTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGATAGGCTTTTATCAAATGCTAGGCTTCTTCACTCAGCTTACACATATATTCCCCAAAGTAGAGCTCCCCCAATTGGTGCTCATTGCTCAGATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGATTGTTTGTGGGCTTTGCACGTACATCTGATTATAATGGACCTAGAAAGCCAGATGGTCCCCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTCAGTTAACGCACAGTATTTTTGGGTCGTGTCCACCTATGCGGAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGAAAGCTTCAAACACTTGACATATTATTGAAACGCTTACGAGCAGAAAATCATCGCGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTACAGAAAATATAGGTATTTTAGACTTGATGGATCATCTACTATTCAGGATCGAAGAGACATGGTCAGAGACTTTCAGCATAGGACTGATATTTTTGTGTTCTTATTGAGCACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATTTACAGGCAATGGACAGAGCTCACCGATTGGGTCAAACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTGTGAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTTATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGTACAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAATTACCTATGAAGGGTATTCGGTTAAATGAAGAAGGTGATGCATCTCTGGAAGACCTAACAAACACCGTAGCCCAGGGTAATTCAGATTATGATATTTCCATAGAGCCAGAGGGATCAAAGTCTAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCAAACTTCGAGGTCCAAGAATTCTCAGAAGATGAGTGAATTTAGTACTACGCCTATGGACGATGAATTGGATGATGTCCATCCAAATACTGATCCAGCTAGCCAGAAACCCAAGAGACCGAAGAGGATAACGAAGAATGTGAACGAAAAGTTTGAAGAGGCTTTTACTGGGACTCCTACCATGGTCCCAGAGCAGCCCCAATTTCCACCTACAAGGGATTATAATGCCGGAGGTTCTATATCAGAATCAGGCCAAGACAACTGA 4686 0.4119 MDHRSKPKDSLSYSTLFNLESLMSFQLPEQDDDFDYYGNSSQDESRDSQGGVIANHSNGNVRGREVSLLKKRRWSQNSDNEEKSSFYGTHMTEERYRSMLGEHIQKYKRRFRDTSTSPAQNQAAVPLVKGNAGLKARKSGNERRGGLHAAETTSEWMNDSNSQRPGNYRDADSMQQHGTDRIMYEPASVDIGDGITYKIPPIYDKLASALNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRNRGGMGEAIPQYESLQARLKIMSASNSAHKFGLKVSDIGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCVKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREVRMKVSRSLKWTRTAGMRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAETLRREQEVREAKRQQQRLNFLIQQTELYSHFMQNKANLISSEALPKVDEDTYDQDALIDSSDAGPNEEEDPEEVELKKEALKAAQEAVSKQRKLTSAFDTECLRLRQAGETDSLPPEVAGASNIDLQTPSTMPVASTVRTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYLSSICNLSFWSLIFIHFISILTIPCLFTREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLSPPPFGELEDVYYSGGHNPISYEIPKLVYQEIMQSSDTLSSAVGHGVSRESFQKHFNIFRPENVYRSVFSEDKCIKSGNFGFTHLIDLSPQEVTFLATSSLMEQLLFSMMRWEQKFIDEAVDFLMETIDDDPECSYLEKEKVRTVTRMLLVPSRSETQFLQKRLPTGPSQAPFEALVVPHQDRLLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDYNGPRKPDGPHHLIQEIDSELPVSQPALQLTHSIFGSCPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRTDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILVRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKLPMKGIRLNEEGDASLEDLTNTVAQGNSDYDISIEPEGSKSSNKKRKAASDKQTSRSKNSQKMSEFSTTPMDDELDDVHPNTDPASQKPKRPKRITKNVNEKFEEAFTGTPTMVPEQPQFPPTRDYNAGGSISESGQDN* 1562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1245 1561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1235 1419 IPR001650 -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 1546 1561 - -
Apr4g1245 1561 Pfam SNF2-related domain 605 919 IPR000330 GO:0005524|GO:0140658
Apr4g1245 1561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 800 IPR014001 -
Apr4g1245 1561 Pfam Helicase conserved C-terminal domain 1235 1344 IPR001650 -
Apr4g1245 1561 Gene3D - 855 924 IPR027417 -
Apr4g1245 1561 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 690 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Apr4g1245 1561 PANTHER CHROMATIN-REMODELING ATPASE INO80 718 1523 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Apr4g1245 1561 MobiDBLite consensus disorder prediction 153 173 - -
Apr4g1245 1561 CDD SF2_C_SNF 1223 1355 - -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 136 173 - -
Apr4g1245 1561 Gene3D - 586 854 IPR038718 -
Apr4g1245 1561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1414 IPR027417 -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 41 62 - -
Apr4g1245 1561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 845 IPR027417 -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 1460 1475 - -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 65 79 - -
Apr4g1245 1561 PANTHER HELICASE SRCAP-RELATED 16 690 - -
Apr4g1245 1561 PANTHER HELICASE SRCAP-RELATED 718 1523 - -
Apr4g1245 1561 Gene3D - 1213 1423 IPR027417 -
Apr4g1245 1561 SMART ultradead3 586 808 IPR014001 -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 1476 1490 - -
Apr4g1245 1561 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Apr4g1245 1561 SMART helicmild6 1261 1344 IPR001650 -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 1449 1561 - -
Apr4g1245 1561 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Apr4g1245 1561 Coils Coil 427 466 - -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 1494 1523 - -
Apr4g1245 1561 MobiDBLite consensus disorder prediction 33 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1245 Apr-Chr4 11276207 11289846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1245 742 918 RAD5 or RAD16-like Gene Family AT1G61140 26.230 6.38e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr4g1245 SNF2_N 1.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1245 K11665 - gmx:100780615 2736.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1245 4 11276207 11289846 Apr4g1245 4 11276207 11289846 ECH