Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1241 ATGGAGAATCTCCTAAAAGACTTCGAGCTCGAACACAAGAATCCCTCCGTCGAAGCTCTCCGGCGATGGAGATCCGCCGTCAGCTTCGTCAAAAACCGCCGTAGACGCTTCCGCATGGTCGCCGATCTTGATCAGCGCTCCAGAGCTGAGCAAATTCAGAAGGGAATCAAGGAAAAAATTCGAATTGCTCTCTATGTTCAAAAGGCTGCATTACAATTTATTGATGGTATGATGCTTCAATTTCAATATCTGCTATCGGGTGAGGCAAGGGAAGCTGGTTTTGGCATTCATCCAGATGAGATTGCTTCTATTGTTCATGGCCATGATTATAAGAACTTGAATGATATTGGTGGAGTTGAAGGCATTGCAAGGAAACTGTCAGTTTCTGTGGATGGAGGTGTCAGCGAAGAGAGTATACATAGCAGACAACAGATTTATGGGGTCAATCGTTATACAGAAAAACCTGCTAGAACGTTCTTTATGTTTGTATGGGACGCACTGCAGGACTTAACTCTGATCATTCTCCTGGTTTGTGCCGTAGTTTCTGTAGGCGTCGGGATTGCCACTGAAGGGTTGCCACAAGGAATGTATGATGGTGTGGGAATCCTACTCAGTATATTCTTGGTAGTCATTGTTACAGCTGTCAGTGACTACAAGCAATCCCTGCAATTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGATCTTAATTTTTGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTTTATTTCAGGATACTCTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCTGTATATGTGAATGAAGAAAAACCTTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGGCTGTAAATGAGGGAGGAGAGGATGAGACTCCATTGCAGGTCAAACTAAATGGTGTTGCAACCATTATTGGTAAAATTGGTTTGACATTTGCTGTTCTGACATTTGTGGTATTGGCAGTAAGGTTTCTGGTTGAAAAAGCACTTCATGGTAAGTTTGCTAGTTGGTCTTCGGATGATGCAATGAAGCTGCTGGACTACTTTGCTATTTCCGTAACCATAATAGTTGTTGCAGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGTACATTGACTACTAACCGAATGGTGGTTAATAAAGTATGGATATGTGAAAAAGCCATTCAGATGAAAGGTAATGAGAGTGCAGACGAACTGAAAACATATTTATCTGAAGGAGTTCTAAACATCCTTTTGCAGGCTATATTTGAAAATACTTCTGCTGAGGTAGTTAAGGGTAAAGATGGAAAGAACAAAATATTGGGAACCCCAACAGAATCAGCACTATTGGAATTTGGCTTGCTTTTGGGGGCAGATTTTGATTCCTATGCTCCGCGCAGAGGGTATAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAGATGTCTGTGCTTGTGGGTGTTCCTAATGGTGGGGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATTGATTGCAATGGGAAAGTTGTTGATCTTCCTGAAGATCGGGCAAATGATGTATCTGATGTTATAAATGGCTTTGCTTCGGATGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGAGATAAACGAAACTCATGGGGAAGACTACATTCCTGATAGTGGCTATACTCTAATAGCCTTAGTAGGAATAAAGGATCCAGTACGCCCCGAGGTTAAGGAAGCTGTTGAAACTTGTATAGCTGCTGGAATAACTGTCCGCATGATCACTGGTGATAACATACATACAGCTAGGGCAATAGCTAAAGAATGTGGTTTACTTACTGAGGGTGGTGTAGCCATTGAAGGTCCAGATTTTCGTAACATGTCTCCTGAGCAAATGAAGGATGTCATACCAACAATCCAGGTGATGGCACGATCCTCACCGCTCGACAAGCATAAGTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCTCCTGCACTGCGTGAAGCAGACATCGGACTTGCAATGGGCATAGCAGGAACAGAGGTTGCTAAAGAAAAGGCGGATGTCATTGTAATGGATGATAACTTCACGACTATTGTCAATGTGGTCAGATGGGGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTTTTGTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTTAACTTGATCATGGATACTCTTGGTGCATTGGCCCTCGCAACCGAACCTCCTAACGATGCACTTTTGGAAAGACCACCAGTTCCTAGGGGAGCAAGCTTTATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTATTCTCATTATTCTGAATTTTGACGGGAAGAGGCTACTCAGAATCGGTGGTTCAGATGCAACAAAAGTACTCAACACATTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGTAAACATAAACGTCTTCAGAGGCATATTTGACAGCTGGATATTTCTGTTAATAATTTTCGTCACTGTGACATTTCAAGTGGTGATAGTTGAATTCCTTGGAGCGTTTGCCAGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTTAGCGTGTTAATAGGAGCAGTTAGCATGCCTATAGCTGCTATCCTAAAGTGCATCCCTGTTGAAAGAAATACTAATAAGCACCATGATGGTTATGAGTCACTGCCATCTGGTCCTGAACTGGCATAA 3108 0.416 MENLLKDFELEHKNPSVEALRRWRSAVSFVKNRRRRFRMVADLDQRSRAEQIQKGIKEKIRIALYVQKAALQFIDGMMLQFQYLLSGEAREAGFGIHPDEIASIVHGHDYKNLNDIGGVEGIARKLSVSVDGGVSEESIHSRQQIYGVNRYTEKPARTFFMFVWDALQDLTLIILLVCAVVSVGVGIATEGLPQGMYDGVGILLSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVTRDGKRQKILIFDIVVGDVVHLSTGDQVPADGIFISGYSLLIDESSLSGESEPVYVNEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMEAVNEGGEDETPLQVKLNGVATIIGKIGLTFAVLTFVVLAVRFLVEKALHGKFASWSSDDAMKLLDYFAISVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVNKVWICEKAIQMKGNESADELKTYLSEGVLNILLQAIFENTSAEVVKGKDGKNKILGTPTESALLEFGLLLGADFDSYAPRRGYKILKVEPFNSVRKKMSVLVGVPNGGVRAFCKGASEIILKMCDKIIDCNGKVVDLPEDRANDVSDVINGFASDALRTLCLAVKEINETHGEDYIPDSGYTLIALVGIKDPVRPEVKEAVETCIAAGITVRMITGDNIHTARAIAKECGLLTEGGVAIEGPDFRNMSPEQMKDVIPTIQVMARSSPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKEKADVIVMDDNFTTIVNVVRWGRAVYINIQKFVQFQLTVNVVALVINFLSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDALLERPPVPRGASFITKPMWRNIIGQSIYQLIILIILNFDGKRLLRIGGSDATKVLNTLIFNSFVFCQVFNEINSRDIVNINVFRGIFDSWIFLLIIFVTVTFQVVIVEFLGAFASTVPLNWQFWLLSVLIGAVSMPIAAILKCIPVERNTNKHHDGYESLPSGPELA* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1241 1035 SUPERFAMILY HAD-like 449 858 IPR036412 -
Apr4g1241 1035 SMART Cation_ATPase_N_a_2 115 187 IPR004014 -
Apr4g1241 1035 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Apr4g1241 1035 Gene3D - 460 657 IPR023299 GO:0000166
Apr4g1241 1035 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Apr4g1241 1035 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Apr4g1241 1035 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Apr4g1241 1035 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Apr4g1241 1035 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Apr4g1241 1035 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Apr4g1241 1035 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Apr4g1241 1035 Gene3D - 15 75 - -
Apr4g1241 1035 SFLD C1.7: P-type atpase like 432 805 - -
Apr4g1241 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1014 IPR023298 -
Apr4g1241 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 662 IPR023299 GO:0000166
Apr4g1241 1035 SFLD p-type atpase 432 805 IPR044492 -
Apr4g1241 1035 Pfam E1-E2 ATPase 235 428 - -
Apr4g1241 1035 Gene3D - 133 333 - -
Apr4g1241 1035 PANTHER CALCIUM-TRANSPORTING ATPASE 54 1020 - -
Apr4g1241 1035 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Apr4g1241 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Apr4g1241 1035 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Apr4g1241 1035 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Apr4g1241 1035 Gene3D - 165 1012 - -
Apr4g1241 1035 Gene3D - 447 798 IPR023214 -
Apr4g1241 1035 Pfam haloacid dehalogenase-like hydrolase 448 767 - -
Apr4g1241 1035 PANTHER CATION TRANSPORTING ATPASE 54 1020 - -
Apr4g1241 1035 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g1241 1035 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g1241 1035 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g1241 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Apr4g1241 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 723 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr4g1241 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1241 Apr-Chr4 11233591 11245072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1241 56 1032 Primary Pumps ATPases AT3G57330 72.774 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1241 K01537 - gmx:100798481 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1241 4 11233591 11245072 Apr4g1241 4 11233591 11245072 ECH
Apr4g1241 4 11233591 11245072 Apr8g0851 8 8944805 8955069 PCT