Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1223 ATGGAGGGAGCAAGTGATAAGGGGTTGGAATGTGGAAGGAAGTGCACTCCACCACCGTTTTTGTTAAAGACATATATGCTAGTGGAAGATCCAGCCACAGACGACGTCGTTTCCTGGAATGATGAAGGGACAGCGTTCGTGGTGTGGCAGCCAGCGGAGTTTGCTCGTGATCTCCTCCCAACACTCTTCAAGCATAGCAACTTTTCTAGCTTTGTGCGCCAGCTCAATACCTATGGCTTTCGTAAAGTTGCAACAAGCAGGTGGGAGTTTTGCAACGAAAGGTTCAGGAAAGGTGAAAGAGAATTGCTATGTGAGATTAGGCGAAGAAAAGCTTGGGCTAGCAAGCAACAACCTAATGCACCAAACCAAGCCATAGGCCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACCTCATCATCTTCAGGTTACACCACTCTTGTGGATGAAAACAAACGACTTAAGAAGGAGAATGGGGTGTTGAGTTCTGAGCTCACCAACATGAAAAGGAAGTGTAGGGAACTTCTTGATTTGGTTGCCAAATATTCATCACATGTAAAGGATCAGAAGGAAGAAGATGAAAGGCCAATGCTTTTTGGAGTGAGACTAGATGTTCAAGGAGGGAGGGAGATGAAGAGGAATAGAGCTGAGCTAAGTGAAAGCGCAAGCATTATGCTGTCTCAGTCTTGCAAATAG 696 0.454 MEGASDKGLECGRKCTPPPFLLKTYMLVEDPATDDVVSWNDEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNERFRKGERELLCEIRRRKAWASKQQPNAPNQAIGQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLSSELTNMKRKCRELLDLVAKYSSHVKDQKEEDERPMLFGVRLDVQGGREMKRNRAELSESASIMLSQSCK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1223 231 Pfam HSF-type DNA-binding 20 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1223 231 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1223 231 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1223 231 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1223 231 ProSitePatterns HSF-type DNA-binding domain signature. 59 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1223 231 MobiDBLite consensus disorder prediction 114 149 - -
Apr4g1223 231 MobiDBLite consensus disorder prediction 115 148 - -
Apr4g1223 231 SMART hsfneu3 16 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1223 231 Coils Coil 151 171 - -
Apr4g1223 231 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 231 IPR027725 -
Apr4g1223 231 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 8 231 - -
Apr4g1223 231 Gene3D - 12 110 IPR036388 -
Apr4g1223 231 SUPERFAMILY "Winged helix" DNA-binding domain 16 109 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1223 Apr-Chr4 10910392 10912698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1223 17 182 HSF AT2G41690 62.778 9.20e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr4g1223 HSF_DNA-bind 8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1223 K09419 - gmx:100802739 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1223 4 10910392 10912698 Apr4g1223 4 10910392 10912698 ECH
Apr4g1223 4 10910392 10912698 Apr8g0842 8 8816990 8820343 PCT