Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1221 ATGGCTTCGTCTTCCTCCGATCCCGGCAAGTCGGCGGAGACGTCGGAAGTGGCGGTGGCGAGCGACCAGATGTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCCAAAGAGCGCATAAGCAAAATGCCTCCATGTGCTGCCGGCAAACGCAGTTCCATATACCGCGGTGTTACTAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAGGAAGCTGCCGCTAGAGCATATGACCTTGCTGCTCTCAAATATTGGGGTCCTGGAACTCTCATTAATTTTCCGGTGACTGATTACACGAGAGATCTTGAAGAAATGCAGAATGTTTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGTATGCTTTCTGCAGGAAGAGCAGTGGGTTTTCAAGAGGACTATCGAAATATCGTGGACTCTCCAGTCGATGGGAGCCATCATATGGCCGAATGGCGGGATCTGATTACTTCAATAGCATACATTATGCTGCAGGGGAAGATTCCGCAGCTGAAAGTGAATATGTAAGCGGTTTCTGCTTAGAAAGAAAGATCGATTTGACAAGTCACATCAAATGGTGGGGATCTAATAAGAGTCGACAACCTGATAATACTGGAACAAGATTATCAGAAGAAAAGAAACTTGGTTCTGCTGGAGATATTTGCAGTGAACTCAAACAATTGGAACAGAGAGTCCAACCCACAGAACCTTACAAGATGCCACAATTAGGCAAGCCCCACGATGAGAAAAGGCGAAGAAGTTCTTCAGTCTCTGCGTTAAGTGTCTTGTCACAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCATCAAAGAGACAGGAGAATAGCACTGATAATGATGAGAATGAAAACAAAAATACAGTCAATAAGTTGGATCATGGAAAGGCAGTTGAGAAACTTTCTAATCACGATGGAGGAAGTGATCGGCTTGACATTACAATGGGAATGAGTGGGACAATGTCTCTTCAAAGAAATGTGTACCCATTGATGCCATTCTTGTCTGCACCGCTTTTGACAGCCTACAACACTGTTGATCCATTGGCAGATCCTGTTCTCTGGACATCTCTTGCTCCTATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACCGAGACCAGCTCAACATACACTATGTTTCAGCCAGAGGAGTGA 1269 0.4515 MASSSSDPGKSAETSEVAVASDQMLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRYAFCRKSSGFSRGLSKYRGLSSRWEPSYGRMAGSDYFNSIHYAAGEDSAAESEYVSGFCLERKIDLTSHIKWWGSNKSRQPDNTGTRLSEEKKLGSAGDICSELKQLEQRVQPTEPYKMPQLGKPHDEKRRRSSSVSALSVLSQSAAYKSLQEKASKRQENSTDNDENENKNTVNKLDHGKAVEKLSNHDGGSDRLDITMGMSGTMSLQRNVYPLMPFLSAPLLTAYNTVDPLADPVLWTSLAPMLPAGLSRTAEVTKTETSSTYTMFQPEE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1221 422 MobiDBLite consensus disorder prediction 285 302 - -
Apr4g1221 422 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Apr4g1221 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 421 - -
Apr4g1221 422 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Apr4g1221 422 MobiDBLite consensus disorder prediction 259 346 - -
Apr4g1221 422 MobiDBLite consensus disorder prediction 303 342 - -
Apr4g1221 422 MobiDBLite consensus disorder prediction 225 244 - -
Apr4g1221 422 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Apr4g1221 422 PANTHER BNAA03G19580D PROTEIN 8 421 - -
Apr4g1221 422 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Apr4g1221 422 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Apr4g1221 422 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Apr4g1221 422 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1221 Apr-Chr4 10845604 10849044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1221 17 420 AP2-EREBP Transcription Factor Family AT2G41710 63.702 1.56e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g1221 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1221 K09285 - gmx:100786651 735.717