Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1202 ATGGGTAACTGCTGCGCCACCCCAACCACAGATGAAACGAAGAACAAGAAGAAGAAGAAGGAAAACCCCTTTGCAATCGACTACGGCTTCAGCAACAACAACAACGCAGCGAACGGGTCAAAGCTTACCGTTTTGAAGTCCCCAACGGGACGCGAGATCGAGGCGCGTTACGAGCTGGGTCGCGAACTGGGTCGCGGCGAGTTCGGAATAACGTACCTTTGCACGGACAAGGAAACGAGAGAGGAGCTAGCGTGCAAGTCGATATCGAAGAAGAAGCTGAGAACCGCCATAGATATCGAAGATGTGAGGAGAGAGGTTGAGATCATGAGGCACTTGCCTAAACACCCTAACATCGTGACCTTGAAGGATACCTACGAGGATGACAATGCCGTTCACCTCGTTATGGAGCTCTGTGAAGGTGGTGAACTCTTCGATCGCATCGTCGCGCGTGGACACTACACCGAACGCGCCGCCGCCGCCGTTACACGAACCATTGTTGAAGTCGTTCAGATGTGCCACAAGCATGGTGTGATGCATAGGGATCTCAAGCCCGAGAACTTTTTGTTTGCAAATAAGAAGGAAACTGCGCCTCTGAAGGCTATAGATTTTGGATTGTCAGTGTTCTTTACGCCAGGGGGAAAATTTAATGAGATAGTAGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGAGAAACTATGGCCCAGAAGTGGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCGATTATTCGATCTGTTGTTGACTTCAAAAGGGATCCATGGCCAAAAGTTTCAGATAATGCGAAAGACCTTGTGAAGAAGATGCTAGATCCTGACCCAAGGCGACGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTACAAAATGCGAAGAAAGCTCCCAATGTTTCATTGGGAGAAACTGTAAGAGCCAGGCTCAAGCAGTTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTAAGGGTAATTGCCGAGCATTTGACTGTGGAAGAAGCTGCCGGGCTGAAAGAGGGATTCCGGGTTATGGATACAAGCAACAGAGGCAAGGTTAACATTGATGAACTACGAGTAGGGTTGCATAAACTAGGCCATCAAGTTCCTGATGCAGATCTCCAAATTCTCATGGAAGCTGTGAACAGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCATCTTCACAAAGCCTTCCAATTTTTCGATGCGAACCAAAGTGGTTATATAGAGATTGAGGAGCTGCGAAGTGCCTTATCGGACGAGGTTGACACAAACAGTGAAGAAGTCATTAGTGCGATTATGCATGATGTGGACACAGACAAGGATGGAAGGATAAGTTATGATGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAATATTCGCGAGAGAGGTTTGCAAGTCTCAGCCTGAAATTGATGAGAGATGGGTCATTGCATCTAAACAATGAAAAGCAATGA 1596 0.463 MGNCCATPTTDETKNKKKKKENPFAIDYGFSNNNNAANGSKLTVLKSPTGREIEARYELGRELGRGEFGITYLCTDKETREELACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFTPGGKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFRVMDTSNRGKVNIDELRVGLHKLGHQVPDADLQILMEAVNRDGHLDYGEFVAISVHLRKMGNDEHLHKAFQFFDANQSGYIEIEELRSALSDEVDTNSEEVISAIMHDVDTDKDGRISYDEFATMMKAGTDWRKASRQYSRERFASLSLKLMRDGSLHLNNEKQ* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1202 531 SMART efh_1 468 496 IPR002048 GO:0005509
Apr4g1202 531 SMART efh_1 432 460 IPR002048 GO:0005509
Apr4g1202 531 SMART efh_1 362 390 IPR002048 GO:0005509
Apr4g1202 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Apr4g1202 531 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1202 531 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Apr4g1202 531 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Apr4g1202 531 SUPERFAMILY EF-hand 339 505 IPR011992 -
Apr4g1202 531 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 12 510 - -
Apr4g1202 531 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Apr4g1202 531 Gene3D - 332 493 - -
Apr4g1202 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 510 - -
Apr4g1202 531 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1202 531 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Apr4g1202 531 Gene3D - 356 422 - -
Apr4g1202 531 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Apr4g1202 531 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Apr4g1202 531 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1202 531 CDD STKc_CAMK 56 314 - -
Apr4g1202 531 Gene3D Transferase(Phosphotransferase) domain 1 143 325 - -
Apr4g1202 531 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Apr4g1202 531 CDD EFh 432 494 IPR002048 GO:0005509
Apr4g1202 531 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Apr4g1202 531 SUPERFAMILY Protein kinase-like (PK-like) 56 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1202 Apr-Chr4 10546147 10550599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1202 1 529 EF-hand Containing Proteins AT5G19450 78.277 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr4g1202 Pkinase 1.9e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1202 K13412 - gmx:100790745 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1202 4 10546147 10550599 Apr4g1202 4 10546147 10550599 ECH
Apr4g1202 4 10546147 10550599 Apr8g0825 8 8602271 8606746 PCT