Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1197 ATGTGCTGTGAGTTGGGGCGGTTAAAGCCTGCGCCGACTCCACTGCTATTACCGATTTTCGTACGCACATCTGAACCCGGAAGCCACAAGATGAATCACTTTTCTGTTGACACTGAAGATTCTTTTGTGAGCTTGCTTGAGCTTGCCGCCAATAACGATAGTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCCATAGATGAGGTTGGGCTGTGGTATGGTCGCCGCAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACGCCTTTGATGGTTGCTGCTACCTATGGGAGCATTGATATTATGAAACTGATTCTCTCTCTATCCGATGCCGATATCAATAGGCCTTGTGGCCTTGACAAGAGCACTGCCCTTCATTGCGCTGCATCAGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAACTGCTCCTGGAAGCAGGGGCTGATCCTAATTCTGTGGATGCCAATGGGCATCGTCCCATAGATGTTATTGTTTTTCCTCCTAAGCTTGAACATGTCAAAAACAGCCTTGAAGAGCTTCTTCAGACTGATGATTCTATTGCTGGGTGTAATCTTAGGGTGATAACAACCTCATCCAATGCTTATTCTCCACCTTTATCAACTTCACCAGAGAATGAGTCTCCTTCTGCACCAGATTTCCAGTTGAAGTTGAAGTCAAATGATATCCCTGTTTGGTCTGCATCAGAGAAGAAAGAGTATCCTGTTGATCCGTCTCTTCCAGACATCAAAAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGAGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGATCCAAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCCTGCAGGCGAGGAGACATGTGTGAATATGCCCATGGGGTTTTTGAGTGCTGGCTGCATCCTGCACAATATCGTACCAGACTCTGTAAGGATGGGACAAATTGTTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCGTTGTATGTTTCAACTGGTTCTGCCGTGCCTTCTCCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCTTCAATGTCAGTCATTTCTCCTTCACCATTCACTCCACCCATGTCACCTTCTGCCAATGGCATTTCACACTCTTCTGTTGCTTGGCCCCAGCCAAACATCCCGGCATTGCATCTTCCTGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCACTCAATGCTAGAGATATTCCTGTGGATGATTTTGATTTGTTACAGGATTATGATCAGCAGCAACAGCTGCTTAATGAGTTATCATGCCTCTCTCCACAGCCTATGAATTCTAATACTATCAACCGTTCTGGGCGCATGAAACCCCTAACTCCTTCAAATCTTGACGATCTTTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCCACATTGGCTTCAACTGTATTTTCTCCAACTCACAAATCAGCCGTCCTTAATCAGTTCCAGCAGCAGCAAAGCTTGTTGTCACCCGTGAATACAAATTTTTCTTCTAAGAATGTTGAACACTCTTTATTGCAAGCCTCATTTGGGGTCCAGACATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATTTCTCCAATGGGCTCTAGGATTTCTATGCTAGCTCAACGTGAGAAGCAGCAACACTTTCGCAGCCTAAGTTCCCGGGAACTTGGCTCTAATTCTGCTGCTGCTGCTGCAGCTGCAGCTGCAGCTGCAGCCTCCGTTAATTCTTGGTCAAAATGGGGATCACCCAATGGTAAGCTGGATTGGGCAGTTGGTGCTGATGAAGTGGGTAAGCTCCGAAGGTCATCTTCATTTGAGCTTGGGAACAACGGTGAGGAGCCTGATTTATCATGGGTTCAGTCACTGGTTAAGGAATCACCTACTGAAATTAAAGAAAAATTGGCAACTACTGTTTCAAATGTTGCAGCAGCTGGATCCTCCGGTGAGGGATCAAATATGAGCACACAAATGGAGTCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAGCAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2205 0.4585 MCCELGRLKPAPTPLLLPIFVRTSEPGSHKMNHFSVDTEDSFVSLLELAANNDSEGFKRLIECDPSSIDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSDADINRPCGLDKSTALHCAASGGAENAVDAVKLLLEAGADPNSVDANGHRPIDVIVFPPKLEHVKNSLEELLQTDDSIAGCNLRVITTSSNAYSPPLSTSPENESPSAPDFQLKLKSNDIPVWSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNMLPGSPSSMSVISPSPFTPPMSPSANGISHSSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIPVDDFDLLQDYDQQQQLLNELSCLSPQPMNSNTINRSGRMKPLTPSNLDDLFSAESSSPRYADPTLASTVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVEHSLLQASFGVQTSGRMSPRNVEPISPMGSRISMLAQREKQQHFRSLSSRELGSNSAAAAAAAAAAAASVNSWSKWGSPNGKLDWAVGADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATTVSNVAAAGSSGEGSNMSTQMESVDHAVLGAWLEQMQLDHLVAQQN* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1197 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 325 IPR000571 GO:0046872
Apr4g1197 734 Gene3D - 40 181 IPR036770 -
Apr4g1197 734 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Apr4g1197 734 SMART ANK_2a 87 117 IPR002110 GO:0005515
Apr4g1197 734 SMART ANK_2a 40 70 IPR002110 GO:0005515
Apr4g1197 734 SMART ANK_2a 122 154 IPR002110 GO:0005515
Apr4g1197 734 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Apr4g1197 734 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Apr4g1197 734 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Apr4g1197 734 SMART c3hfinal6 335 358 IPR000571 GO:0046872
Apr4g1197 734 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Apr4g1197 734 SUPERFAMILY Ankyrin repeat 44 169 IPR036770 -
Apr4g1197 734 Pfam Ankyrin repeats (3 copies) 48 156 IPR002110 GO:0005515
Apr4g1197 734 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
Apr4g1197 734 PANTHER UNKEMPT FAMILY MEMBER 31 731 IPR045234 -
Apr4g1197 734 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 31 731 - -
Apr4g1197 734 Gene3D - 301 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1197 Apr-Chr4 10461078 10464978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1197 39 727 C2H2 Transcription Factor Family AT5G12850 53.977 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr4g1197 Ank_2 1.4e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1197 - - ccaj:109796653 1278.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1197 4 10461078 10464978 Apr4g1197 4 10461078 10464978 ECH