Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1194 ATGAATACTTGCAAGAAATCTCCCTTGAAGCCATGGAAGAAGGGGTCAACCAGAGGGAAAGGTGGCCCCCAGAATGCCTCGTGTGAGTATCGAGGCGTGCGGCAGAGAACTTGGGGCAAATGGGTTGCTGAAATAAGAGAGCCGAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGATCATATGGCCCAGATGCATACCTTAATCTTCCCCACCTAAAACCCAACTCCAATTCACCTATCACATCTGCAAAGTTCAAGTGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTGAATTCTCAACCTAGCGTTCATTTAATCCATCAGAGACTACAAGAGCTTAAGCAGAACTCAGTTGTAAGTCAATCTCCATCTGATTCATCCAATGATAAAAGGGCAGAAATTCAGAATGTAGAGAGCAAAAATCATGCAGAAAATCCTCCAAAAATAAAAGATCCTCAAGCATCATCAGAAGATGTACTTGGAGATATTCATGAGAAACCCCAGATAGACCTCCACGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAAGACAGTTGGAAAAAGCTGATAGCTCAGAAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATCAACTTGGAGTGTTTTCTGACCAGGGTGTTAACTGGGAGGCATTGATTGAGATGGATGGAATTGCAGATATTCAGGAATCAGAAGCCACTCACCTTTAA 795 0.434 MNTCKKSPLKPWKKGSTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRSYGPDAYLNLPHLKPNSNSPITSAKFKWFPSKNFISMFPSCGLLNVNSQPSVHLIHQRLQELKQNSVVSQSPSDSSNDKRAEIQNVESKNHAENPPKIKDPQASSEDVLGDIHEKPQIDLHEFLQQLGILKEERQLEKADSSESSTVPEAVLRDDNDQLGVFSDQGVNWEALIEMDGIADIQESEATHL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1194 264 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Apr4g1194 264 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Apr4g1194 264 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Apr4g1194 264 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Apr4g1194 264 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Apr4g1194 264 Pfam AP2 domain 28 75 IPR001471 GO:0003700|GO:0006355
Apr4g1194 264 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Apr4g1194 264 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Apr4g1194 264 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 258 - -
Apr4g1194 264 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 258 - -
Apr4g1194 264 MobiDBLite consensus disorder prediction 1 28 - -
Apr4g1194 264 MobiDBLite consensus disorder prediction 161 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1194 Apr-Chr4 10425071 10425865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1194 5 250 AP2-EREBP Transcription Factor Family AT3G57600 54.941 4.40e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr4g1194 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1194 - - gmx:100801311 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1194 4 10425071 10425865 Apr4g1194 4 10425071 10425865 ECH
Apr4g1194 4 10425071 10425865 Apr8g0809 8 8322208 8323095 PCT