Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1193 ATGGCAACGGAGAGGAAGAAAACTTCACCACTTTCTTTGGAGCAATTCATCTCCATTACCGCCCCTCTTCTTGATTTGGAAAAGGAAGCTGAAATATCAACCTCAATCGCCACTGGCGCGTCCAGGAATTTGGATACTGCTCAAAGGAGGGGCTCCACAATCCTTAACTTGAAGTGTGTGGATGTTCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGACGTTCTTCCTGCGCACAAGTTTAGTACGCATGATGTTGTTGTTTTAAAACTCAACAAAGCTGATTTAGGTTCTAATGCTCTTGGACAAGGCGTAGTTTACAGGTTAAAGGACTCATCAATAACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCTAATGAGGTGACATATCGCAGGATGAAAGATGCATTGATACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCGGCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCTCCAACTGTGTCCAAGAAGGATGTATCCTTCACTCCCTTTAATGTCAATCTTGATCACTCCCAGAAAGATGCAGTTTCAAAAGCTCTATCCTCGAAGAATGTGTTCTTGTTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTGAAACGTGGATCTAAAATTCTTGCTTGTGCTGCCTCTAATATTGCTGTTGACAACATCGTTGAGCGTTTAGTTCCACACAGAGTTAAGCTGGTGAGACTGGGTCACCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGATATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACAAGGAGGGACATACAGAAGGAACTTAGGGTTCTATCCAAAGAAGAGCGTAAAAGACAGCAGCTTGCTGTAACAGATGTAATTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAACACTTCATTTGATTTGTTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCACCTTCAACTTCCACCAACCATTCAAAGTGTTGAAGCTGAAAAGAAAGGCTTAGGAAGAACGCTATTTGAAAGACTTTCAGAAATGTATGGAGATGAAATAACATCCATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGAATTGGTCTTCTAAAGAGCTTTATAACAGTAAGATCAAGGCTCATCCAAGTGTTGCTGCACATACACTAAGCGGTCTTGAAGGTGCGAAGAGGACATCTTCAACTGAACCGACCCTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAGGTTACTGTGGCTCATGCAAAGAGACTAATGCAAAGTGGGGTGCTCCCTTCTGATATTGGAATTATCACCCCATACGCTGCTCAGGTTGTTTTACTCAAAATATTGAAAAACAAGGAGGACCGGCTGAAGGATGTAGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAATGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACAAGGGCAAGAAGGCAATGTTGTCTTATCTGTGACACAGAAACAGTCAGTAGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGCGAATATCAGAGTGCATCTGAGTACCAGAATGAGTAG 1938 0.4231 MATERKKTSPLSLEQFISITAPLLDLEKEAEISTSIATGASRNLDTAQRRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADLGSNALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFTPFNVNLDHSQKDAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRVLSKEERKRQQLAVTDVIKSADVILTTLIGAFSKKLDNTSFDLLIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLSEMYGDEITSMLTVQYRMHELIMNWSSKELYNSKIKAHPSVAAHTLSGLEGAKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLMQSGVLPSDIGIITPYAAQVVLLKILKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKNEVGFLSDRRRMNVAVTRARRQCCLICDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1193 645 Gene3D - 39 141 - -
Apr4g1193 645 Pfam AAA domain 195 409 IPR041677 GO:0004386
Apr4g1193 645 PANTHER HELICASE WITH ZINC FINGER 2 10 643 - -
Apr4g1193 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 630 IPR027417 -
Apr4g1193 645 Gene3D - 441 645 IPR027417 -
Apr4g1193 645 Gene3D - 22 425 IPR027417 -
Apr4g1193 645 SMART ultradead3 191 442 IPR014001 -
Apr4g1193 645 TIGRFAM TIGR00376: putative DNA helicase 343 640 IPR004483 GO:0003677|GO:0005524
Apr4g1193 645 SMART AAA_5 209 461 IPR003593 -
Apr4g1193 645 CDD SF1_C_Upf1 443 631 IPR041679 -
Apr4g1193 645 CDD DEXXQc_SMUBP2 194 442 - -
Apr4g1193 645 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 10 643 - -
Apr4g1193 645 Pfam AAA domain 418 614 IPR041679 -
Apr4g1193 645 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1193 Apr-Chr4 10417518 10426201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1193 168 378 Core DNA Replication Machinery Family AT1G08840 27.014 4.37e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1193 K19036 - gmx:100810545 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1193 4 10417518 10426201 Apr4g1193 4 10417518 10426201 ECH