Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1189 ATGGCTGACCCCTACTCTAATTTCTTCTCTTCCTCAACTTTCTTTCAATTCCATCACCATTTTCCATCTTCCAACCCTTCTCCACACACTCCACACAGTCCTTATGTCCATCACAACTTCATCAACCACACCAAAAGCAACGACACCACCTTTTTACACTATCACAATCTCCACCACCACCACCACAGTAACACTACTACTACTACCACTTTTTCTTCTTCTTTTCCTCCTTCCCCTCCTCTTAGAGAAGAACTACCCCTCTTGAGGTTGAGCCCAGCAAAGCAAGAGGAGGAAGAGCAAGAACAAGAGGACATGTCTTGCACTGCAGTCATGGACATGGAGGACAGGATCCAACTCAAAGAGGAAGATGATGATGAAGAACATGGCACTGTCACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTTTCATCTTCCTCAGAGATCACAGATAAAGAACATGGAGATGGTGGTGAGGATTCTTCTGCAGGGTTCATGGTCAACAGGCTCAACAAGGGCCAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTAAGGGGTACCCAACCAACAGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATTAAGCCCTTTATGTGTAGAAAATGCGGTAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTACTGTATCTGTGGCTCGGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGAATCGACGGTTTCGAAGAAGATGATGAGCCTGCATCCGAAGTGGAGCAAGATAATGATTCCACCCAGTAA 1080 0.4583 MADPYSNFFSSSTFFQFHHHFPSSNPSPHTPHSPYVHHNFINHTKSNDTTFLHYHNLHHHHHSNTTTTTTFSSSFPPSPPLREELPLLRLSPAKQEEEEQEQEDMSCTAVMDMEDRIQLKEEDDDEEHGTVTVALHIGLPSPSAAEMASVLSSSSEITDKEHGDGGEDSSAGFMVNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDEPASEVEQDNDSTQ* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1189 359 PANTHER ZINC FINGER PROTEIN WIP2 1 359 IPR043584 GO:0003700|GO:0010468
Apr4g1189 359 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 359 - -
Apr4g1189 359 SMART c2h2final6 282 302 IPR013087 -
Apr4g1189 359 SMART c2h2final6 198 220 IPR013087 -
Apr4g1189 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 302 IPR013087 -
Apr4g1189 359 SUPERFAMILY beta-beta-alpha zinc fingers 264 302 IPR036236 -
Apr4g1189 359 MobiDBLite consensus disorder prediction 341 359 - -
Apr4g1189 359 MobiDBLite consensus disorder prediction 62 83 - -
Apr4g1189 359 MobiDBLite consensus disorder prediction 340 359 - -
Apr4g1189 359 Gene3D Classic Zinc Finger 197 220 - -
Apr4g1189 359 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Apr4g1189 359 MobiDBLite consensus disorder prediction 63 77 - -
Apr4g1189 359 Gene3D Classic Zinc Finger 260 334 - -
Apr4g1189 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1189 Apr-Chr4 10378358 10380718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1189 1 356 C2H2 Transcription Factor Family AT3G57670 62.595 3.16e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g1189 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1189 - - gmx:100802907 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1189 4 10378358 10380718 Apr4g1189 4 10378358 10380718 ECH
Apr4g1189 4 10378358 10380718 Apr2g2342 2 28251326 28253343 ECH
Apr4g1189 4 10378358 10380718 Apr8g0805 8 8233700 8235920 PCT