Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1188 ATGGAGACAGATAACAGTGACACAAGGTCCAAAAAGATGGAAGACTATGAAGTGATAGAGCAAATTGGAAGAGGAGCATTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACTTGATTGCAAAACTAAATAACCGCTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGCCTTATAATTGGCTATTGTGAAGGAGGTGACATGGCTGAATACATAAAGAAAGCTCGAGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAATTGTTAATAGCTGTGGACTATTTACACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGATAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCAACTTAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTTGCTGACATACCTTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTACTGCACATCAACCAGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAACAGATCTTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTAATCAGGAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACAGCAGCTGAATTGCTAAGACATCCACTTCTACAACCTTATGTTCTTCGCTGTCATAATGCATCATCTAATTTTCTTCCAGTATATCCCATTGTTAATTCAAAGGATAAAGCAAGAAAATCTTATAAATATAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAGGATTAGTAAATAATTTGGAACGGGTTCACCCAGTTGAGGGAAATGGAGATGTACAGATAAGCAATCTTCCTAATGATGCCGCAACAATCTCATCTAGTGCAGAAGACAGCCTTGAGACCAAGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATCAGTGGCTCAAAAGATGGGTCAACCACATCTGAATCCACGATTTTCAGTGTGTGCAAGGACGACTTTAAAAGCAGACCTTCAAGGGAAACAGCCAGCAGTGAGATCGCTTCAAAGAGTACACATGATTCTGTGCACGACGAACAAGGATTTGCTGCTAAACATTTTCAGAAATTAGAAGGGTATGACATAAATGCCTTGACTGCAGAAATTGAAGATGCTTTTTGCATTGAAGGTTTTGACAATGATGAGGCAAAGAGGGAAGCTGCCAATCTTGAGGACTCCCAGAAATCAACATCTTCGAGTGCAGGAAGCAGTATCACTGATAAAGATAAATCCATTAATGAGGAAAGGTCACCATTAAACGAGAATCTGATTACAGTTGAACACAATACTGAATCTGGAAACTGCTCAAACAAAAGTGAAAACCCTGATGCATCTACCGAAGACTCTCATATGAACTGCTTGACATCTGATGGTAATAATACACTTCCTGTTAAGGAGGATGACAAAGCAAAGAAACTCATTCGTTGTTCCACACATAAAGAAGATGATAATGCAGTGGAGGTTGATCATACGCCAAGTGGCATTTCATTGAGTGTAATAACTGAAGAAGGTGACGATGAAACAATCAAGACGGTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTTGAAGCTCTGCTTGAGCTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTGCTAAGACCCTTCGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGGCAAAGAGCCTCATGTCTTCCCAAAAGTTTAATCATGAAACCTAG 1950 0.4113 METDNSDTRSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNRYIVEYKDAWVEKEDHICLIIGYCEGGDMAEYIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKQLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEITAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIRSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNFLPVYPIVNSKDKARKSYKYSGGKDHKDKEAGLVNNLERVHPVEGNGDVQISNLPNDAATISSSAEDSLETKMVDLTSYIVESSTSISGSKDGSTTSESTIFSVCKDDFKSRPSRETASSEIASKSTHDSVHDEQGFAAKHFQKLEGYDINALTAEIEDAFCIEGFDNDEAKREAANLEDSQKSTSSSAGSSITDKDKSINEERSPLNENLITVEHNTESGNCSNKSENPDASTEDSHMNCLTSDGNNTLPVKEDDKAKKLIRCSTHKEDDNAVEVDHTPSGISLSVITEEGDDETIKTVLDSPCQQRADALEALLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLMSSQKFNHET* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1188 649 Gene3D Transferase(Phosphotransferase) domain 1 96 283 - -
Apr4g1188 649 MobiDBLite consensus disorder prediction 463 478 - -
Apr4g1188 649 SUPERFAMILY Protein kinase-like (PK-like) 13 298 IPR011009 -
Apr4g1188 649 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1188 649 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Apr4g1188 649 MobiDBLite consensus disorder prediction 488 532 - -
Apr4g1188 649 MobiDBLite consensus disorder prediction 457 535 - -
Apr4g1188 649 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Apr4g1188 649 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 485 - -
Apr4g1188 649 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 495 632 - -
Apr4g1188 649 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 485 - -
Apr4g1188 649 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 495 632 - -
Apr4g1188 649 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1188 649 MobiDBLite consensus disorder prediction 394 414 - -
Apr4g1188 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Apr4g1188 649 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1188 649 CDD STKc_Nek 15 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1188 Apr-Chr4 10347310 10353142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1188 9 271 MAP Kinase Kinase Kinase AT3G13530 33.459 6.35e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Apr4g1188 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1188 K08857 - gmx:100793379 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1188 4 10347310 10353142 Apr4g1188 4 10347310 10353142 ECH
Apr4g1188 4 10347310 10353142 Apr8g0803 8 8181621 8189607 PCT