Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1187 ATGGCGCAGAAGGAGAAAGCTAGGGTTTCTGATGACGAAGAAATGAAAGCGCAACATGATCAAAGCAGTCTCTACCAGGTTCTTGGTGTGGAGAGAACGGCCTCTCAGCAGGAAATAAAAAAGGCCTACTACAAGTTGGCGTTGCGGCTCCACCCTGATAAGAACCTTGGTGATGAGGAAGCTAAACAGAAATTTCAGCAACTGCAAAAGGTGATTTCAATTCTTGGAGATGAAGAGAAACGGGCCCTGTATGACCAGACTGGTTATGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCATGTGTTCTTCAGAACAACGTACAAAAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGATTCAGAGAAAAATGATTTGATTGATCTATACAAGAAGTGCAAGGGTAATATGAACAGGCTTTTTTGTTCGATGCTTTGTTCAGATCCTAAACTTGACTCACACCGATTCAAGGATATTCTTGACGATGCTGTAGCTGCCGGAGAACTAAAGGAAACAAAAGCCTATCAGAAATGGGCTAAGGAAGTATCTGAAACCAAACCACCGACAAGTCCTTTGAGGAGGAGGGCAAAATCAAATAAGCAGTCAGAAACAGATCTGTACGCAATCATAGCACAACGCCGAAATGATAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTTGTTTCCAAATATGGGGGTGGTGATATGCCAGAACCCTCTGAAGAGGAGTTTCAAGCTGCACGGAGAAAGCTGGAGAGTGGTAGATCCTCTAAAAAATCAAAGCAAACAAAGCGGAAGTAG 834 0.4305 MAQKEKARVSDDEEMKAQHDQSSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNLGDEEAKQKFQQLQKVISILGDEEKRALYDQTGYVDDADLAGDVVQNLHVFFRTTYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDDAVAAGELKETKAYQKWAKEVSETKPPTSPLRRRAKSNKQSETDLYAIIAQRRNDRKGQFDSMFSSLVSKYGGGDMPEPSEEEFQAARRKLESGRSSKKSKQTKRK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1187 277 MobiDBLite consensus disorder prediction 189 215 - -
Apr4g1187 277 MobiDBLite consensus disorder prediction 1 20 - -
Apr4g1187 277 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 273 IPR042977 -
Apr4g1187 277 MobiDBLite consensus disorder prediction 252 269 - -
Apr4g1187 277 SUPERFAMILY Chaperone J-domain 20 94 IPR036869 -
Apr4g1187 277 MobiDBLite consensus disorder prediction 1 19 - -
Apr4g1187 277 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 273 - -
Apr4g1187 277 CDD DnaJ 25 77 IPR001623 -
Apr4g1187 277 PRINTS DnaJ domain signature 25 43 IPR001623 -
Apr4g1187 277 PRINTS DnaJ domain signature 43 58 IPR001623 -
Apr4g1187 277 PRINTS DnaJ domain signature 60 80 IPR001623 -
Apr4g1187 277 PRINTS DnaJ domain signature 80 99 IPR001623 -
Apr4g1187 277 MobiDBLite consensus disorder prediction 239 277 - -
Apr4g1187 277 Pfam DnaJ domain 24 85 IPR001623 -
Apr4g1187 277 Gene3D DnaJ domain 7 101 IPR036869 -
Apr4g1187 277 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Apr4g1187 277 SMART dnaj_3 22 80 IPR001623 -
Apr4g1187 277 MobiDBLite consensus disorder prediction 197 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1187 Apr-Chr4 10342194 10344576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1187 25 85 C2H2 Transcription Factor Family AT1G74250 40.909 4.40e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1187 K09529 - gmx:100793909 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1187 4 10342194 10344576 Apr4g1187 4 10342194 10344576 ECH
Apr4g1187 4 10342194 10344576 Apr8g0795 8 8122186 8125138 PCT