Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1186 ATGGAGTCTCACGATGACTGCCAAGCTCCGGAACGTCCCATTCTTTGCATTAACAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTATTGAAGCAGGAGCAGGACAAGCTCGCAGCATCATCAGTTGAAAATATTGTAAATGGCAATTCCACCAGCCATGGTAAGCAGGCTGTGATTGGAGGTGCTGTTGATGCACAAGTTGGAACTGTGGAGATAAAGACTGCCTGTGCTCAGAGTTTTGGGGATTCTTCCTCTGGTGGGAGTTTGGAGATGAAAGTCAAGACTGGTACCAATAGATGCGCCACATGTCAAAAACGTGTTGGATTAACTGGTTTCAACTGCAAATGTGGCAACCTCTTTTGCGCAATGCATCGCTATTCTGATAAACATGATTGCTCCTTTGATTATAGGAGTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCAATAATTAAGGCAGATAAGCTTGATAAAATTTAG 513 0.4405 MESHDDCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGNSTSHGKQAVIGGAVDAQVGTVEIKTACAQSFGDSSSGGSLEMKVKTGTNRCATCQKRVGLTGFNCKCGNLFCAMHRYSDKHDCSFDYRSVGQDAIAKANPIIKADKLDKI* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1186 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
Apr4g1186 170 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Apr4g1186 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 5 170 - -
Apr4g1186 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 53 - -
Apr4g1186 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
Apr4g1186 170 SUPERFAMILY AN1-like Zinc finger 103 165 IPR035896 -
Apr4g1186 170 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Apr4g1186 170 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Apr4g1186 170 Gene3D - 95 166 IPR035896 -
Apr4g1186 170 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 5 170 - -
Apr4g1186 170 Pfam AN1-like Zinc finger 111 147 IPR000058 GO:0008270
Apr4g1186 170 Gene3D - 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1186 Apr-Chr4 10332542 10334618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1186 1 170 C2H2 Transcription Factor Family AT3G52800 41.520 1.27e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1186 - - gmx:100499995 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1186 4 10332542 10334618 Apr4g1186 4 10332542 10334618 ECH
Apr4g1186 4 10332542 10334618 Apr2g2346 2 28286928 28289303 ECH